Experiment: MoYLS4 media with NH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0878 and DvMF_0879 overlap by 11 nucleotides DvMF_0879 and DvMF_0880 are separated by 174 nucleotides DvMF_0880 and DvMF_0881 are separated by 107 nucleotides
DvMF_0878: DvMF_0878 - protein of unknown function UPF0052 and CofD (RefSeq), at 1,061,141 to 1,062,562
_0878
DvMF_0879: DvMF_0879 - hypothetical protein (RefSeq), at 1,062,552 to 1,062,815
_0879
DvMF_0880: DvMF_0880 - phosphate uptake regulator, PhoU (RefSeq), at 1,062,990 to 1,063,670
_0880
DvMF_0881: DvMF_0881 - phosphate ABC transporter, ATPase subunit (RefSeq), at 1,063,778 to 1,064,545
_0881
Position (kb) 1062
1063
1064 Strain fitness (log2 ratio) -1
0
1
2
3 at 1062.031 kb on + strand, within DvMF_0878 at 1062.039 kb on - strand, within DvMF_0878 at 1062.978 kb on - strand at 1063.161 kb on + strand, within DvMF_0880 at 1063.229 kb on + strand, within DvMF_0880 at 1063.450 kb on + strand, within DvMF_0880 at 1063.458 kb on - strand, within DvMF_0880 at 1063.513 kb on - strand, within DvMF_0880 at 1064.059 kb on - strand, within DvMF_0881 at 1064.098 kb on + strand, within DvMF_0881 at 1064.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 remove 1,062,031 + DvMF_0878 0.63 -0.4 1,062,039 - DvMF_0878 0.63 +0.3 1,062,978 - -0.3 1,063,161 + DvMF_0880 0.25 -0.6 1,063,229 + DvMF_0880 0.35 +3.5 1,063,450 + DvMF_0880 0.68 -0.4 1,063,458 - DvMF_0880 0.69 -0.5 1,063,513 - DvMF_0880 0.77 -0.5 1,064,059 - DvMF_0881 0.37 -0.6 1,064,098 + DvMF_0881 0.42 -0.2 1,064,627 + -0.3
Or see this region's nucleotide sequence