Experiment: MoYLS4 media with NH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0221 and DvMF_0222 are separated by 155 nucleotides DvMF_0222 and DvMF_0223 overlap by 11 nucleotides
DvMF_0221: DvMF_0221 - OmpA/MotB domain protein (RefSeq), at 247,202 to 248,239
_0221
DvMF_0222: DvMF_0222 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 248,395 to 249,816
_0222
DvMF_0223: DvMF_0223 - glycine dehydrogenase subunit 2 (RefSeq), at 249,806 to 251,251
_0223
Position (kb) 248
249
250 Strain fitness (log2 ratio) -2
-1
0
1
2 at 247.439 kb on - strand, within DvMF_0221 at 248.075 kb on - strand, within DvMF_0221 at 248.107 kb on + strand, within DvMF_0221 at 248.404 kb on + strand at 248.557 kb on + strand, within DvMF_0222 at 248.844 kb on - strand, within DvMF_0222 at 248.908 kb on - strand, within DvMF_0222 at 248.924 kb on - strand, within DvMF_0222 at 248.931 kb on + strand, within DvMF_0222 at 248.931 kb on + strand, within DvMF_0222 at 248.933 kb on + strand, within DvMF_0222 at 248.941 kb on - strand, within DvMF_0222 at 248.946 kb on + strand, within DvMF_0222 at 249.031 kb on + strand, within DvMF_0222 at 249.115 kb on - strand, within DvMF_0222 at 249.374 kb on - strand, within DvMF_0222 at 249.469 kb on + strand, within DvMF_0222 at 249.558 kb on + strand, within DvMF_0222 at 249.582 kb on - strand, within DvMF_0222 at 249.673 kb on + strand, within DvMF_0222 at 249.696 kb on - strand at 249.696 kb on - strand at 249.850 kb on + strand at 249.902 kb on + strand at 249.927 kb on + strand at 249.927 kb on + strand at 250.049 kb on - strand, within DvMF_0223 at 250.214 kb on + strand, within DvMF_0223 at 250.465 kb on - strand, within DvMF_0223 at 250.597 kb on + strand, within DvMF_0223 at 250.605 kb on - strand, within DvMF_0223 at 250.697 kb on + strand, within DvMF_0223 at 250.713 kb on - strand, within DvMF_0223 at 250.766 kb on - strand, within DvMF_0223 at 250.785 kb on + strand, within DvMF_0223
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 remove 247,439 - DvMF_0221 0.23 +0.6 248,075 - DvMF_0221 0.84 -2.0 248,107 + DvMF_0221 0.87 -2.3 248,404 + -0.2 248,557 + DvMF_0222 0.11 -0.1 248,844 - DvMF_0222 0.32 -0.2 248,908 - DvMF_0222 0.36 -0.3 248,924 - DvMF_0222 0.37 -0.9 248,931 + DvMF_0222 0.38 -0.7 248,931 + DvMF_0222 0.38 +0.2 248,933 + DvMF_0222 0.38 -0.4 248,941 - DvMF_0222 0.38 -1.5 248,946 + DvMF_0222 0.39 -0.3 249,031 + DvMF_0222 0.45 -0.7 249,115 - DvMF_0222 0.51 -0.3 249,374 - DvMF_0222 0.69 -0.7 249,469 + DvMF_0222 0.76 -0.5 249,558 + DvMF_0222 0.82 +0.3 249,582 - DvMF_0222 0.83 -0.1 249,673 + DvMF_0222 0.90 -0.7 249,696 - -0.4 249,696 - -0.3 249,850 + +2.0 249,902 + +0.0 249,927 + -0.1 249,927 + -0.5 250,049 - DvMF_0223 0.17 +0.2 250,214 + DvMF_0223 0.28 -0.4 250,465 - DvMF_0223 0.46 -0.5 250,597 + DvMF_0223 0.55 -1.3 250,605 - DvMF_0223 0.55 -1.2 250,697 + DvMF_0223 0.62 -0.9 250,713 - DvMF_0223 0.63 -0.4 250,766 - DvMF_0223 0.66 -0.9 250,785 + DvMF_0223 0.68 -1.0
Or see this region's nucleotide sequence