Experiment: MoYLS4 media with NH4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0195 and DvMF_0196 are separated by 97 nucleotides DvMF_0196 and DvMF_0197 are separated by 330 nucleotides DvMF_0197 and DvMF_0198 are separated by 383 nucleotides DvMF_0198 and DvMF_0199 are separated by 114 nucleotides
DvMF_0195: DvMF_0195 - RNP-1 like RNA-binding protein (RefSeq), at 214,229 to 214,495
_0195
DvMF_0196: DvMF_0196 - translation initiation factor IF-1 (RefSeq), at 214,593 to 214,811
_0196
DvMF_0197: DvMF_0197 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 215,142 to 216,617
_0197
DvMF_0198: DvMF_0198 - hypothetical protein (RefSeq), at 217,001 to 217,324
_0198
DvMF_0199: DvMF_0199 - ATP:corrinoid adenosyltransferase BtuR/CobO/CobP (RefSeq), at 217,439 to 217,942
_0199
Position (kb) 215
216
217 Strain fitness (log2 ratio) -2
-1
0
1 at 214.443 kb on + strand, within DvMF_0195 at 214.451 kb on - strand, within DvMF_0195 at 214.897 kb on + strand at 214.939 kb on - strand at 215.091 kb on - strand at 215.233 kb on + strand at 215.428 kb on - strand, within DvMF_0197 at 215.808 kb on + strand, within DvMF_0197 at 216.061 kb on + strand, within DvMF_0197 at 216.069 kb on - strand, within DvMF_0197 at 216.069 kb on - strand, within DvMF_0197 at 216.092 kb on - strand, within DvMF_0197 at 216.176 kb on + strand, within DvMF_0197 at 216.218 kb on - strand, within DvMF_0197 at 216.321 kb on + strand, within DvMF_0197 at 216.348 kb on + strand, within DvMF_0197 at 216.348 kb on + strand, within DvMF_0197 at 216.399 kb on + strand, within DvMF_0197 at 216.418 kb on + strand, within DvMF_0197 at 216.587 kb on + strand at 216.668 kb on - strand at 216.967 kb on - strand at 217.271 kb on + strand, within DvMF_0198 at 217.271 kb on + strand, within DvMF_0198 at 217.271 kb on + strand, within DvMF_0198 at 217.271 kb on + strand, within DvMF_0198 at 217.271 kb on + strand, within DvMF_0198 at 217.279 kb on - strand, within DvMF_0198 at 217.279 kb on - strand, within DvMF_0198 at 217.429 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 remove 214,443 + DvMF_0195 0.80 -0.5 214,451 - DvMF_0195 0.83 +0.1 214,897 + +0.6 214,939 - -0.4 215,091 - -0.7 215,233 + -1.1 215,428 - DvMF_0197 0.19 +0.9 215,808 + DvMF_0197 0.45 -1.6 216,061 + DvMF_0197 0.62 -0.3 216,069 - DvMF_0197 0.63 -0.3 216,069 - DvMF_0197 0.63 -2.0 216,092 - DvMF_0197 0.64 -0.4 216,176 + DvMF_0197 0.70 -0.3 216,218 - DvMF_0197 0.73 -0.2 216,321 + DvMF_0197 0.80 -0.2 216,348 + DvMF_0197 0.82 +0.8 216,348 + DvMF_0197 0.82 -0.6 216,399 + DvMF_0197 0.85 +0.3 216,418 + DvMF_0197 0.86 -0.2 216,587 + -0.5 216,668 - -0.3 216,967 - -0.4 217,271 + DvMF_0198 0.83 -0.6 217,271 + DvMF_0198 0.83 -0.7 217,271 + DvMF_0198 0.83 -0.3 217,271 + DvMF_0198 0.83 -0.5 217,271 + DvMF_0198 0.83 +0.1 217,279 - DvMF_0198 0.86 -0.4 217,279 - DvMF_0198 0.86 -1.0 217,429 + -1.5
Or see this region's nucleotide sequence