Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0248

Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0246 and ntrX are separated by 362 nucleotidesntrX and DVU0248 are separated by 9 nucleotidesDVU0248 and DVU0249 are separated by 2 nucleotides DVU0246: DVU0246 - pyruvate phosphate dikinase, PEP/pyruvate binding domain protein (TIGR), at 278,347 to 280,581 DVU0246 DVU0247: ntrX - response regulator (TIGR), at 280,944 to 281,303 ntrX DVU0248: DVU0248 - sensory box histidine kinase, authentic point mutation (TIGR), at 281,313 to 283,421 DVU0248 DVU0249: DVU0249 - conserved hypothetical protein (TIGR), at 283,424 to 284,395 DVU0249 Position (kb) 281 282 283 284Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 280.326 kb on - strand, within DVU0246at 280.341 kb on + strand, within DVU0246at 280.360 kb on - strandat 280.365 kb on + strandat 280.419 kb on - strandat 280.419 kb on - strandat 280.464 kb on - strandat 280.573 kb on + strandat 280.581 kb on - strandat 280.593 kb on - strandat 280.611 kb on + strandat 280.649 kb on - strandat 280.670 kb on - strandat 280.670 kb on - strandat 280.702 kb on + strandat 280.720 kb on + strandat 280.767 kb on - strandat 280.814 kb on - strandat 280.814 kb on - strandat 280.825 kb on - strandat 280.869 kb on - strandat 280.902 kb on + strandat 280.921 kb on + strandat 280.978 kb on + strandat 280.997 kb on + strand, within ntrXat 281.007 kb on + strand, within ntrXat 281.084 kb on + strand, within ntrXat 281.089 kb on + strand, within ntrXat 281.097 kb on - strand, within ntrXat 281.125 kb on - strand, within ntrXat 281.125 kb on - strand, within ntrXat 281.228 kb on - strand, within ntrXat 281.263 kb on + strand, within ntrXat 281.312 kb on - strandat 281.432 kb on + strandat 281.482 kb on + strandat 281.520 kb on + strandat 281.520 kb on + strandat 281.533 kb on - strand, within DVU0248at 281.624 kb on - strand, within DVU0248at 281.934 kb on + strand, within DVU0248at 281.976 kb on - strand, within DVU0248at 281.976 kb on - strand, within DVU0248at 281.977 kb on + strand, within DVU0248at 282.003 kb on + strand, within DVU0248at 282.015 kb on + strand, within DVU0248at 282.133 kb on + strand, within DVU0248at 282.133 kb on + strand, within DVU0248at 282.172 kb on - strand, within DVU0248at 282.179 kb on + strand, within DVU0248at 282.188 kb on + strand, within DVU0248at 282.210 kb on - strand, within DVU0248at 282.303 kb on - strand, within DVU0248at 282.377 kb on + strand, within DVU0248at 282.417 kb on + strand, within DVU0248at 282.421 kb on + strand, within DVU0248at 282.421 kb on + strand, within DVU0248at 282.455 kb on + strand, within DVU0248at 282.489 kb on - strand, within DVU0248at 282.501 kb on + strand, within DVU0248at 282.583 kb on + strand, within DVU0248at 282.678 kb on + strand, within DVU0248at 282.678 kb on + strand, within DVU0248at 282.713 kb on + strand, within DVU0248at 282.745 kb on + strand, within DVU0248at 282.757 kb on + strand, within DVU0248at 282.990 kb on + strand, within DVU0248at 282.997 kb on + strand, within DVU0248at 282.998 kb on - strand, within DVU0248at 282.998 kb on - strand, within DVU0248at 283.015 kb on - strand, within DVU0248at 283.127 kb on + strand, within DVU0248at 283.142 kb on - strand, within DVU0248at 283.142 kb on - strand, within DVU0248at 283.142 kb on - strand, within DVU0248at 283.196 kb on + strand, within DVU0248at 283.204 kb on - strand, within DVU0248at 283.204 kb on - strand, within DVU0248at 283.209 kb on - strand, within DVU0248at 283.229 kb on + strandat 283.280 kb on + strandat 283.320 kb on - strandat 283.395 kb on - strandat 283.395 kb on - strandat 283.438 kb on + strandat 283.446 kb on + strandat 283.448 kb on - strandat 283.490 kb on - strandat 283.530 kb on + strand, within DVU0249at 283.571 kb on + strand, within DVU0249at 283.584 kb on - strand, within DVU0249at 283.618 kb on - strand, within DVU0249at 283.618 kb on - strand, within DVU0249at 283.619 kb on + strand, within DVU0249at 283.692 kb on - strand, within DVU0249at 283.819 kb on + strand, within DVU0249at 283.827 kb on - strand, within DVU0249at 283.838 kb on + strand, within DVU0249at 283.925 kb on + strand, within DVU0249at 283.970 kb on + strand, within DVU0249at 283.970 kb on + strand, within DVU0249at 283.990 kb on + strand, within DVU0249at 284.085 kb on + strand, within DVU0249at 284.122 kb on - strand, within DVU0249at 284.125 kb on + strand, within DVU0249at 284.133 kb on - strand, within DVU0249at 284.145 kb on + strand, within DVU0249at 284.146 kb on - strand, within DVU0249at 284.272 kb on + strand, within DVU0249at 284.295 kb on + strand, within DVU0249at 284.298 kb on - strandat 284.317 kb on + strandat 284.320 kb on - strandat 284.324 kb on + strandat 284.325 kb on - strandat 284.395 kb on + strandat 284.403 kb on - strandat 284.405 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
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280,326 - DVU0246 0.89 +3.6
280,341 + DVU0246 0.89 +2.4
280,360 - +3.3
280,365 + +3.3
280,419 - +2.9
280,419 - +1.4
280,464 - +3.2
280,573 + +1.5
280,581 - +2.9
280,593 - +2.2
280,611 + +2.2
280,649 - +2.9
280,670 - +4.2
280,670 - +3.4
280,702 + +3.1
280,720 + +1.5
280,767 - +3.0
280,814 - +1.8
280,814 - +4.7
280,825 - +1.8
280,869 - +2.7
280,902 + +4.0
280,921 + +2.8
280,978 + +5.5
280,997 + ntrX DVU0247 0.15 +5.3
281,007 + ntrX DVU0247 0.17 +5.2
281,084 + ntrX DVU0247 0.39 +5.5
281,089 + ntrX DVU0247 0.40 +4.2
281,097 - ntrX DVU0247 0.42 +5.5
281,125 - ntrX DVU0247 0.50 +5.0
281,125 - ntrX DVU0247 0.50 +5.3
281,228 - ntrX DVU0247 0.79 +4.3
281,263 + ntrX DVU0247 0.89 +5.3
281,312 - -0.4
281,432 + +4.2
281,482 + +2.8
281,520 + +3.2
281,520 + +3.0
281,533 - DVU0248 0.10 +2.4
281,624 - DVU0248 0.15 -0.4
281,934 + DVU0248 0.29 -0.6
281,976 - DVU0248 0.31 -0.4
281,976 - DVU0248 0.31 -2.3
281,977 + DVU0248 0.31 +2.0
282,003 + DVU0248 0.33 +1.3
282,015 + DVU0248 0.33 -0.9
282,133 + DVU0248 0.39 +1.2
282,133 + DVU0248 0.39 +0.4
282,172 - DVU0248 0.41 +1.5
282,179 + DVU0248 0.41 +1.2
282,188 + DVU0248 0.41 +2.0
282,210 - DVU0248 0.43 +1.3
282,303 - DVU0248 0.47 +2.1
282,377 + DVU0248 0.50 +2.4
282,417 + DVU0248 0.52 -1.2
282,421 + DVU0248 0.53 -0.9
282,421 + DVU0248 0.53 +1.1
282,455 + DVU0248 0.54 +2.1
282,489 - DVU0248 0.56 +2.1
282,501 + DVU0248 0.56 -2.1
282,583 + DVU0248 0.60 -0.1
282,678 + DVU0248 0.65 -0.1
282,678 + DVU0248 0.65 -0.0
282,713 + DVU0248 0.66 +2.2
282,745 + DVU0248 0.68 +2.1
282,757 + DVU0248 0.68 +2.2
282,990 + DVU0248 0.80 +2.5
282,997 + DVU0248 0.80 +2.4
282,998 - DVU0248 0.80 +1.1
282,998 - DVU0248 0.80 +1.4
283,015 - DVU0248 0.81 +0.9
283,127 + DVU0248 0.86 +2.5
283,142 - DVU0248 0.87 +1.7
283,142 - DVU0248 0.87 -0.8
283,142 - DVU0248 0.87 +1.8
283,196 + DVU0248 0.89 +0.6
283,204 - DVU0248 0.90 -0.4
283,204 - DVU0248 0.90 +1.1
283,209 - DVU0248 0.90 +2.5
283,229 + +2.6
283,280 + -0.8
283,320 - +2.5
283,395 - +2.3
283,395 - -1.6
283,438 + +0.6
283,446 + +2.2
283,448 - +0.1
283,490 - -0.4
283,530 + DVU0249 0.11 +1.4
283,571 + DVU0249 0.15 +2.2
283,584 - DVU0249 0.16 +1.7
283,618 - DVU0249 0.20 +0.2
283,618 - DVU0249 0.20 +1.6
283,619 + DVU0249 0.20 +2.0
283,692 - DVU0249 0.28 -0.4
283,819 + DVU0249 0.41 -0.2
283,827 - DVU0249 0.41 +1.8
283,838 + DVU0249 0.43 +1.0
283,925 + DVU0249 0.52 +1.0
283,970 + DVU0249 0.56 -0.7
283,970 + DVU0249 0.56 +2.4
283,990 + DVU0249 0.58 +1.3
284,085 + DVU0249 0.68 +1.9
284,122 - DVU0249 0.72 -0.6
284,125 + DVU0249 0.72 +2.3
284,133 - DVU0249 0.73 -0.3
284,145 + DVU0249 0.74 +1.9
284,146 - DVU0249 0.74 +2.2
284,272 + DVU0249 0.87 +2.7
284,295 + DVU0249 0.90 +1.8
284,298 - +0.1
284,317 + +2.1
284,320 - +2.0
284,324 + +1.3
284,325 - +2.0
284,395 + -0.5
284,403 - +0.3
284,405 + -0.3

Or see this region's nucleotide sequence