Experiment: No grazer plate rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt aroE and dnak2 are separated by 178 nucleotides dnak2 and Synpcc7942_2469 are separated by 177 nucleotides
Synpcc7942_2467: aroE - shikimate 5-dehydrogenase, at 2,547,577 to 2,548,443
aroE
Synpcc7942_2468: dnak2 - Heat shock protein Hsp70, at 2,548,622 to 2,550,526
dnak2
Synpcc7942_2469: Synpcc7942_2469 - hypothetical protein, at 2,550,704 to 2,551,474
_2469
Position (kb)
2548
2549
2550
2551 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2548.440 kb on + strand at 2548.452 kb on - strand at 2548.459 kb on - strand at 2548.472 kb on + strand at 2548.480 kb on - strand at 2548.480 kb on - strand at 2548.480 kb on - strand at 2548.480 kb on - strand at 2550.405 kb on + strand at 2550.407 kb on + strand at 2550.633 kb on - strand at 2550.662 kb on + strand at 2550.668 kb on + strand at 2550.668 kb on + strand at 2550.674 kb on + strand at 2550.676 kb on - strand at 2550.676 kb on - strand at 2550.682 kb on - strand at 2550.682 kb on - strand at 2550.716 kb on - strand at 2550.738 kb on - strand at 2550.754 kb on - strand at 2550.754 kb on - strand at 2550.768 kb on + strand at 2550.777 kb on + strand at 2550.813 kb on + strand, within Synpcc7942_2469 at 2550.813 kb on + strand, within Synpcc7942_2469 at 2550.816 kb on - strand, within Synpcc7942_2469 at 2550.832 kb on + strand, within Synpcc7942_2469 at 2550.853 kb on - strand, within Synpcc7942_2469 at 2550.909 kb on - strand, within Synpcc7942_2469 at 2550.982 kb on + strand, within Synpcc7942_2469 at 2550.991 kb on - strand, within Synpcc7942_2469 at 2551.044 kb on - strand, within Synpcc7942_2469 at 2551.046 kb on - strand, within Synpcc7942_2469 at 2551.082 kb on - strand, within Synpcc7942_2469 at 2551.095 kb on - strand, within Synpcc7942_2469 at 2551.114 kb on - strand, within Synpcc7942_2469 at 2551.173 kb on + strand, within Synpcc7942_2469 at 2551.173 kb on - strand, within Synpcc7942_2469 at 2551.181 kb on - strand, within Synpcc7942_2469 at 2551.181 kb on - strand, within Synpcc7942_2469 at 2551.201 kb on - strand, within Synpcc7942_2469 at 2551.280 kb on + strand, within Synpcc7942_2469 at 2551.399 kb on + strand at 2551.399 kb on + strand at 2551.445 kb on + strand at 2551.463 kb on + strand at 2551.471 kb on - strand at 2551.511 kb on - strand at 2551.516 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction No grazer plate rep 1 remove 2,548,440 + -0.5 2,548,452 - +1.3 2,548,459 - +0.5 2,548,472 + -1.3 2,548,480 - +1.4 2,548,480 - +1.1 2,548,480 - -0.3 2,548,480 - -1.1 2,550,405 + -0.5 2,550,407 + -0.5 2,550,633 - -2.3 2,550,662 + +0.1 2,550,668 + -0.9 2,550,668 + -0.6 2,550,674 + -1.4 2,550,676 - -0.7 2,550,676 - -1.2 2,550,682 - -2.3 2,550,682 - -0.9 2,550,716 - -1.1 2,550,738 - -1.1 2,550,754 - -0.3 2,550,754 - -2.8 2,550,768 + -3.3 2,550,777 + -1.2 2,550,813 + Synpcc7942_2469 0.14 -0.9 2,550,813 + Synpcc7942_2469 0.14 -1.5 2,550,816 - Synpcc7942_2469 0.15 -2.0 2,550,832 + Synpcc7942_2469 0.17 -0.7 2,550,853 - Synpcc7942_2469 0.19 -1.2 2,550,909 - Synpcc7942_2469 0.27 -0.5 2,550,982 + Synpcc7942_2469 0.36 -2.0 2,550,991 - Synpcc7942_2469 0.37 +0.5 2,551,044 - Synpcc7942_2469 0.44 -1.1 2,551,046 - Synpcc7942_2469 0.44 -1.2 2,551,082 - Synpcc7942_2469 0.49 -2.8 2,551,095 - Synpcc7942_2469 0.51 -2.2 2,551,114 - Synpcc7942_2469 0.53 -1.8 2,551,173 + Synpcc7942_2469 0.61 -0.3 2,551,173 - Synpcc7942_2469 0.61 -1.5 2,551,181 - Synpcc7942_2469 0.62 -2.6 2,551,181 - Synpcc7942_2469 0.62 -1.2 2,551,201 - Synpcc7942_2469 0.64 -1.6 2,551,280 + Synpcc7942_2469 0.75 -1.1 2,551,399 + -2.9 2,551,399 + -1.1 2,551,445 + -2.9 2,551,463 + -2.7 2,551,471 - -0.5 2,551,511 - -0.0 2,551,516 + -0.9
Or see this region's nucleotide sequence