Experiment: No grazer plate rep 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_2119 and Synpcc7942_2120 are separated by 41 nucleotides Synpcc7942_2120 and spoIIA are separated by 2 nucleotides spoIIA and carA are separated by 50 nucleotides carA and trpD are separated by 65 nucleotides
Synpcc7942_2119: Synpcc7942_2119 - RNA methyltransferase TrmH, group 3, at 2,200,097 to 2,201,656
_2119
Synpcc7942_2120: Synpcc7942_2120 - Ribonuclease III, at 2,201,698 to 2,202,114
_2120
Synpcc7942_2121: spoIIA - anti-anti-sigma regulatory factor, SpoIIAA, at 2,202,117 to 2,202,509
spoIIA
Synpcc7942_2122: carA - carbamoyl phosphate synthase small subunit, at 2,202,560 to 2,203,735
carA
Synpcc7942_2123: trpD - anthranilate phosphoribosyltransferase, at 2,203,801 to 2,204,847
trpD
Position (kb)
2202
2203
2204 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2201.697 kb on - strand at 2201.757 kb on + strand, within Synpcc7942_2120 at 2201.757 kb on + strand, within Synpcc7942_2120 at 2201.765 kb on - strand, within Synpcc7942_2120 at 2201.765 kb on - strand, within Synpcc7942_2120 at 2201.775 kb on - strand, within Synpcc7942_2120 at 2201.778 kb on + strand, within Synpcc7942_2120 at 2201.779 kb on + strand, within Synpcc7942_2120 at 2201.779 kb on + strand, within Synpcc7942_2120 at 2201.787 kb on - strand, within Synpcc7942_2120 at 2201.787 kb on - strand, within Synpcc7942_2120 at 2201.879 kb on + strand, within Synpcc7942_2120 at 2201.889 kb on + strand, within Synpcc7942_2120 at 2201.889 kb on + strand, within Synpcc7942_2120 at 2201.889 kb on + strand, within Synpcc7942_2120 at 2201.889 kb on + strand, within Synpcc7942_2120 at 2201.897 kb on - strand, within Synpcc7942_2120 at 2202.018 kb on + strand, within Synpcc7942_2120 at 2202.026 kb on - strand, within Synpcc7942_2120 at 2202.028 kb on + strand, within Synpcc7942_2120 at 2202.029 kb on + strand, within Synpcc7942_2120 at 2202.060 kb on + strand, within Synpcc7942_2120 at 2202.093 kb on + strand at 2202.093 kb on + strand at 2202.100 kb on - strand at 2202.101 kb on - strand at 2202.546 kb on + strand at 2202.557 kb on + strand at 2202.566 kb on - strand at 2202.566 kb on - strand at 2202.566 kb on - strand at 2202.575 kb on + strand at 2202.590 kb on + strand at 2202.605 kb on - strand at 2203.700 kb on + strand at 2203.743 kb on - strand at 2203.796 kb on + strand at 2203.799 kb on - strand at 2203.805 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction No grazer plate rep 1 remove 2,201,697 - +1.6 2,201,757 + Synpcc7942_2120 0.14 +0.4 2,201,757 + Synpcc7942_2120 0.14 +0.9 2,201,765 - Synpcc7942_2120 0.16 -0.2 2,201,765 - Synpcc7942_2120 0.16 +1.0 2,201,775 - Synpcc7942_2120 0.18 +2.9 2,201,778 + Synpcc7942_2120 0.19 +2.2 2,201,779 + Synpcc7942_2120 0.19 +2.1 2,201,779 + Synpcc7942_2120 0.19 +0.1 2,201,787 - Synpcc7942_2120 0.21 +1.8 2,201,787 - Synpcc7942_2120 0.21 +2.0 2,201,879 + Synpcc7942_2120 0.43 +2.2 2,201,889 + Synpcc7942_2120 0.46 +1.1 2,201,889 + Synpcc7942_2120 0.46 -0.4 2,201,889 + Synpcc7942_2120 0.46 +0.8 2,201,889 + Synpcc7942_2120 0.46 +0.6 2,201,897 - Synpcc7942_2120 0.48 +0.9 2,202,018 + Synpcc7942_2120 0.77 +5.5 2,202,026 - Synpcc7942_2120 0.79 +1.0 2,202,028 + Synpcc7942_2120 0.79 +2.4 2,202,029 + Synpcc7942_2120 0.79 +1.1 2,202,060 + Synpcc7942_2120 0.87 +2.1 2,202,093 + -0.4 2,202,093 + +1.9 2,202,100 - +1.5 2,202,101 - +2.2 2,202,546 + +1.0 2,202,557 + +1.0 2,202,566 - -1.5 2,202,566 - -0.0 2,202,566 - -1.6 2,202,575 + +0.8 2,202,590 + -2.3 2,202,605 - -2.3 2,203,700 + -1.7 2,203,743 - -1.8 2,203,796 + -1.1 2,203,799 - +0.6 2,203,805 - -0.8
Or see this region's nucleotide sequence