Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0118

Experiment: No grazer plate rep 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0117 and gatB are separated by 220 nucleotidesgatB and Synpcc7942_0119 are separated by 307 nucleotides Synpcc7942_0117: Synpcc7942_0117 - thiol methyltransferase 1-like, at 115,391 to 116,722 _0117 Synpcc7942_0118: gatB - aspartyl/glutamyl-tRNA amidotransferase subunit B, at 116,943 to 118,427 gatB Synpcc7942_0119: Synpcc7942_0119 - hypothetical protein, at 118,735 to 119,292 _0119 Position (kb) 116 117 118 119Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 116.040 kb on + strand, within Synpcc7942_0117at 116.268 kb on - strand, within Synpcc7942_0117at 116.279 kb on - strand, within Synpcc7942_0117at 116.280 kb on - strand, within Synpcc7942_0117at 116.439 kb on - strand, within Synpcc7942_0117at 116.520 kb on + strand, within Synpcc7942_0117at 116.576 kb on - strand, within Synpcc7942_0117at 116.685 kb on + strandat 116.688 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.770 kb on + strandat 116.778 kb on - strandat 116.778 kb on - strandat 116.778 kb on - strandat 116.778 kb on - strandat 116.778 kb on - strandat 116.824 kb on - strandat 116.897 kb on + strandat 116.897 kb on + strandat 116.902 kb on + strandat 116.905 kb on - strandat 116.905 kb on - strandat 116.910 kb on - strandat 118.422 kb on + strandat 118.460 kb on + strandat 118.460 kb on + strandat 118.460 kb on + strandat 118.460 kb on + strandat 118.468 kb on - strandat 118.479 kb on + strandat 118.491 kb on + strandat 118.535 kb on - strandat 118.566 kb on - strandat 118.570 kb on + strandat 118.571 kb on - strandat 118.575 kb on + strandat 118.606 kb on - strandat 118.608 kb on + strandat 118.686 kb on + strandat 118.734 kb on + strandat 118.739 kb on + strandat 118.740 kb on - strandat 118.765 kb on + strandat 118.783 kb on - strandat 118.797 kb on - strand, within Synpcc7942_0119at 118.823 kb on + strand, within Synpcc7942_0119at 118.914 kb on - strand, within Synpcc7942_0119at 118.921 kb on + strand, within Synpcc7942_0119at 118.921 kb on + strand, within Synpcc7942_0119at 118.921 kb on + strandat 118.921 kb on + strand, within Synpcc7942_0119at 118.943 kb on - strand, within Synpcc7942_0119at 118.948 kb on + strand, within Synpcc7942_0119at 118.948 kb on - strand, within Synpcc7942_0119at 118.951 kb on - strand, within Synpcc7942_0119at 118.956 kb on - strand, within Synpcc7942_0119at 118.957 kb on + strand, within Synpcc7942_0119at 118.965 kb on - strand, within Synpcc7942_0119at 118.965 kb on - strand, within Synpcc7942_0119at 118.965 kb on - strand, within Synpcc7942_0119at 118.978 kb on - strand, within Synpcc7942_0119at 118.993 kb on + strand, within Synpcc7942_0119at 118.993 kb on + strand, within Synpcc7942_0119at 119.071 kb on - strand, within Synpcc7942_0119at 119.071 kb on - strand, within Synpcc7942_0119at 119.080 kb on + strandat 119.220 kb on + strand, within Synpcc7942_0119at 119.230 kb on - strand, within Synpcc7942_0119at 119.240 kb on + strandat 119.375 kb on + strandat 119.397 kb on - strandat 119.401 kb on + strandat 119.401 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.408 kb on + strandat 119.413 kb on + strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.416 kb on - strandat 119.423 kb on + strandat 119.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction No grazer plate rep 1
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116,040 + Synpcc7942_0117 0.49 +0.5
116,268 - Synpcc7942_0117 0.66 -2.1
116,279 - Synpcc7942_0117 0.67 -0.3
116,280 - Synpcc7942_0117 0.67 -1.1
116,439 - Synpcc7942_0117 0.79 +0.1
116,520 + Synpcc7942_0117 0.85 -0.3
116,576 - Synpcc7942_0117 0.89 -0.1
116,685 + -0.4
116,688 + +0.1
116,770 + +0.5
116,770 + +0.6
116,770 + -3.8
116,770 + -1.2
116,770 + +0.1
116,770 + -0.1
116,778 - -0.5
116,778 - -0.4
116,778 - -0.4
116,778 - -1.7
116,778 - +1.2
116,824 - +0.0
116,897 + +0.3
116,897 + +0.7
116,902 + +0.8
116,905 - -2.5
116,905 - -1.2
116,910 - -1.0
118,422 + -0.7
118,460 + +0.3
118,460 + -1.1
118,460 + -0.6
118,460 + +0.7
118,468 - -0.1
118,479 + -0.3
118,491 + +0.3
118,535 - -0.3
118,566 - +0.4
118,570 + +0.9
118,571 - -2.0
118,575 + -0.5
118,606 - -0.5
118,608 + +0.4
118,686 + -0.8
118,734 + -0.5
118,739 + -1.4
118,740 - +1.1
118,765 + +0.8
118,783 - -1.5
118,797 - Synpcc7942_0119 0.11 -0.8
118,823 + Synpcc7942_0119 0.16 -1.0
118,914 - Synpcc7942_0119 0.32 -0.8
118,921 + Synpcc7942_0119 0.33 -0.6
118,921 + Synpcc7942_0119 0.33 -1.5
118,921 + -0.0
118,921 + Synpcc7942_0119 0.33 -1.3
118,943 - Synpcc7942_0119 0.37 -2.4
118,948 + Synpcc7942_0119 0.38 -0.3
118,948 - Synpcc7942_0119 0.38 -0.0
118,951 - Synpcc7942_0119 0.39 -1.1
118,956 - Synpcc7942_0119 0.40 +0.2
118,957 + Synpcc7942_0119 0.40 -3.2
118,965 - Synpcc7942_0119 0.41 -1.0
118,965 - Synpcc7942_0119 0.41 -1.3
118,965 - Synpcc7942_0119 0.41 -0.4
118,978 - Synpcc7942_0119 0.44 -0.3
118,993 + Synpcc7942_0119 0.46 -0.4
118,993 + Synpcc7942_0119 0.46 -0.3
119,071 - Synpcc7942_0119 0.60 -0.4
119,071 - Synpcc7942_0119 0.60 +0.6
119,080 + +0.2
119,220 + Synpcc7942_0119 0.87 -1.1
119,230 - Synpcc7942_0119 0.89 +0.2
119,240 + -0.0
119,375 + -0.6
119,397 - +2.0
119,401 + -1.1
119,401 + -1.6
119,408 + -2.1
119,408 + -0.4
119,408 + +0.3
119,408 + -0.2
119,408 + -1.1
119,408 + -0.4
119,408 + -1.7
119,408 + -2.6
119,408 + -2.5
119,408 + -1.5
119,408 + -0.0
119,413 + +0.7
119,416 - -1.0
119,416 - +0.2
119,416 - -1.2
119,416 - -0.3
119,416 - -0.1
119,416 - +0.9
119,416 - +0.0
119,416 - +0.4
119,416 - -1.4
119,416 - -0.6
119,416 - -0.2
119,423 + -1.8
119,423 + -0.6

Or see this region's nucleotide sequence