Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS18995

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	diet=HighFatHighSugar; sample=FecalPellet; mouse14; day1
2,039,003	+				-1.0
2,039,003	+				+0.7
2,039,011	-				-3.1
2,039,011	-				-0.0
2,039,011	-				-0.4
2,039,011	-				-1.0
2,039,027	-				-0.9
2,039,053	+				+1.2
2,039,068	+				+0.3
2,039,076	-				+1.1
2,039,077	-				+0.3
2,039,128	-				-2.4
2,039,128	-				-0.9
2,039,158	+				-1.4
2,039,158	+				-0.9
2,039,159	-				-1.7
2,039,161	-				+0.5
2,039,163	+				+1.2
2,039,163	+				-1.5
2,039,163	+				+2.1
2,039,165	-				-0.3
2,039,166	-				-1.3
2,039,189	+				-1.9
2,039,207	+				+0.8
2,039,207	+				-0.3
2,039,248	-				-2.7
2,039,287	+				+1.0
2,039,292	+				+0.2
2,039,293	-				-0.7
2,039,295	-				-2.9
2,039,296	-				-0.8
2,039,861	-		BBR_RS18990	0.85	+4.1
2,039,861	-		BBR_RS18990	0.85	+3.5
2,039,861	-		BBR_RS18990	0.85	+1.5
2,039,875	-		BBR_RS18990	0.87	+1.8
2,039,923	-				-0.2
2,039,947	-				+0.2
2,039,948	-				+1.0
2,039,952	+				-1.4
2,039,953	-				-2.1
2,039,953	-				-0.3
2,039,955	-				+0.5
2,039,969	-				-0.3
2,039,969	-				-0.2
2,039,977	+				-1.0
2,039,977	+				+0.7
2,039,985	-				+1.3
2,040,009	-				-2.0
2,040,013	+				+0.4
2,040,013	+				-1.0
2,040,013	+				+1.4
2,040,013	+				+1.0
2,040,013	+				+0.6
2,040,015	+				-0.9
2,040,031	-		BBR_RS18995	0.11	-0.7
2,040,031	-		BBR_RS18995	0.11	-2.5
2,040,047	+		BBR_RS18995	0.14	-2.3
2,040,054	+		BBR_RS18995	0.15	-0.2
2,040,056	+		BBR_RS18995	0.15	-0.3
2,040,063	+		BBR_RS18995	0.16	-0.1
2,040,064	-		BBR_RS18995	0.17	-0.2
2,040,064	-		BBR_RS18995	0.17	+1.5
2,040,126	-		BBR_RS18995	0.26	-2.1
2,040,135	-		BBR_RS18995	0.28	+1.1
2,040,184	-		BBR_RS18995	0.35	-0.1
2,040,193	+		BBR_RS18995	0.37	-1.8
2,040,193	+		BBR_RS18995	0.37	-0.3
2,040,201	-		BBR_RS18995	0.38	+1.8
2,040,201	-		BBR_RS18995	0.38	+0.2
2,040,201	-		BBR_RS18995	0.38	-0.4
2,040,241	+		BBR_RS18995	0.44	+0.3
2,040,241	+		BBR_RS18995	0.44	-0.1
2,040,255	+		BBR_RS18995	0.46	+1.0
2,040,255	+		BBR_RS18995	0.46	+0.1
2,040,262	-		BBR_RS18995	0.47	-2.7
2,040,262	-		BBR_RS18995	0.47	-1.3
2,040,263	-		BBR_RS18995	0.48	+0.5
2,040,317	+		BBR_RS18995	0.56	-1.6
2,040,317	+		BBR_RS18995	0.56	-0.5
2,040,322	+		BBR_RS18995	0.57	-0.2
2,040,330	-		BBR_RS18995	0.58	-0.3
2,040,330	-		BBR_RS18995	0.58	+0.2
2,040,330	-		BBR_RS18995	0.58	-0.6
2,040,330	-		BBR_RS18995	0.58	+0.3
2,040,339	-		BBR_RS18995	0.59	-0.9
2,040,339	-		BBR_RS18995	0.59	+0.5
2,040,340	-		BBR_RS18995	0.60	-1.0
2,040,342	+		BBR_RS18995	0.60	-0.6
2,040,346	+		BBR_RS18995	0.60	+2.1
2,040,347	+		BBR_RS18995	0.61	-1.5
2,040,355	-		BBR_RS18995	0.62	-2.2
2,040,355	-		BBR_RS18995	0.62	+0.2
2,040,356	+		BBR_RS18995	0.62	+0.2
2,040,364	+		BBR_RS18995	0.63	-0.0
2,040,364	-		BBR_RS18995	0.63	-0.6
2,040,364	-		BBR_RS18995	0.63	+0.6
2,040,382	-		BBR_RS18995	0.66	-0.5
2,040,387	-		BBR_RS18995	0.67	-0.8
2,040,395	-		BBR_RS18995	0.68	+0.3
2,040,395	-		BBR_RS18995	0.68	-1.5
2,040,418	+		BBR_RS18995	0.72	+0.2
2,040,418	+		BBR_RS18995	0.72	+0.2
2,040,418	+		BBR_RS18995	0.72	-1.2
2,040,418	+		BBR_RS18995	0.72	-0.9
2,040,418	+		BBR_RS18995	0.72	-0.6
2,040,418	+		BBR_RS18995	0.72	-0.4
2,040,426	-		BBR_RS18995	0.73	-0.4
2,040,426	-		BBR_RS18995	0.73	-2.7
2,040,426	-		BBR_RS18995	0.73	-2.5
2,040,426	-		BBR_RS18995	0.73	-0.2
2,040,426	-		BBR_RS18995	0.73	-1.8
2,040,434	-		BBR_RS18995	0.74	-1.1
2,040,436	-		BBR_RS18995	0.74	+0.6
2,040,497	+		BBR_RS18995	0.84	-0.6
2,040,497	+		BBR_RS18995	0.84	+0.9
2,040,505	+		BBR_RS18995	0.85	-0.7
2,040,505	+		BBR_RS18995	0.85	-3.5
2,040,505	-		BBR_RS18995	0.85	+1.4
2,040,510	-		BBR_RS18995	0.86	+0.5
2,040,546	+				+0.4
2,040,546	-				-0.1
2,040,546	-				+0.7
2,040,546	-				+1.8
2,040,582	+				-0.3
2,040,588	-				+1.0
2,040,590	-				+0.2
2,040,590	-				+0.7
2,040,590	-				-0.7
2,040,590	-				+0.6
2,040,590	-				+1.1
2,040,590	-				-1.1
2,040,591	+				-3.0
2,040,599	-				-0.6
2,040,614	-				-0.2
2,040,629	-				-0.9
2,040,642	+				-1.8
2,040,642	+				+0.1
2,040,642	+				+1.4
2,040,644	+				-0.3
2,040,650	-				-0.6
2,040,650	-				-2.1
2,040,650	-				+0.8
2,040,671	-				-0.7
2,040,671	-				-0.1
2,040,671	-				+1.4
2,040,677	-				-1.4
2,040,703	-				+1.1
2,040,726	-		BBR_RS19000	0.10	-0.2
2,040,726	-		BBR_RS19000	0.10	+1.3
2,040,735	+		BBR_RS19000	0.11	+1.3
2,040,741	+		BBR_RS19000	0.12	+1.2
2,040,741	+		BBR_RS19000	0.12	-2.9
2,040,760	-		BBR_RS19000	0.13	+0.7
2,040,760	-		BBR_RS19000	0.13	+0.4
2,040,760	-		BBR_RS19000	0.13	-0.9
2,040,770	-		BBR_RS19000	0.14	+0.4
2,040,775	+		BBR_RS19000	0.15	-1.6
2,040,775	+		BBR_RS19000	0.15	-0.7
2,040,775	+		BBR_RS19000	0.15	-2.3
2,040,775	+		BBR_RS19000	0.15	+1.3
2,040,775	+		BBR_RS19000	0.15	+0.8
2,040,775	+		BBR_RS19000	0.15	-0.3
2,040,775	+		BBR_RS19000	0.15	-0.8
2,040,775	+		BBR_RS19000	0.15	+0.8
2,040,775	+		BBR_RS19000	0.15	+0.5
2,040,779	-		BBR_RS19000	0.15	-1.3
2,040,780	+		BBR_RS19000	0.15	-0.1
2,040,780	+		BBR_RS19000	0.15	-2.0
2,040,783	+		BBR_RS19000	0.16	-1.4
2,040,783	-		BBR_RS19000	0.16	+1.5
2,040,793	-		BBR_RS19000	0.17	+2.4
2,040,805	+		BBR_RS19000	0.18	+0.1
2,040,840	+		BBR_RS19000	0.21	+0.5
2,040,842	+		BBR_RS19000	0.22	+0.4
2,040,848	-		BBR_RS19000	0.22	-1.0
2,040,848	-		BBR_RS19000	0.22	-0.8
2,040,850	-		BBR_RS19000	0.22	+1.2
2,040,852	+		BBR_RS19000	0.23	+0.7
2,040,858	+		BBR_RS19000	0.23	-0.7
2,040,858	-		BBR_RS19000	0.23	+1.1
2,040,867	+		BBR_RS19000	0.24	-1.1
2,040,882	+		BBR_RS19000	0.25	+0.2
2,040,882	+		BBR_RS19000	0.25	-0.4
2,040,887	+		BBR_RS19000	0.26	+0.1
2,040,887	+		BBR_RS19000	0.26	+0.4
2,040,890	-		BBR_RS19000	0.26	+0.5
2,040,890	-		BBR_RS19000	0.26	-0.3
2,040,890	-		BBR_RS19000	0.26	-1.3
2,040,890	-		BBR_RS19000	0.26	+0.2
2,040,890	-		BBR_RS19000	0.26	+0.9
2,040,890	-		BBR_RS19000	0.26	+0.0
2,040,890	-		BBR_RS19000	0.26	-0.2
2,040,892	+		BBR_RS19000	0.26	+0.8
2,040,903	+		BBR_RS19000	0.28	+0.0
2,040,905	+		BBR_RS19000	0.28	-0.6
2,040,994	-		BBR_RS19000	0.36	+1.4
2,040,996	+		BBR_RS19000	0.37	-0.1
2,041,023	+		BBR_RS19000	0.39	-0.7
2,041,023	+		BBR_RS19000	0.39	-4.1
2,041,023	+		BBR_RS19000	0.39	-0.3
2,041,026	-		BBR_RS19000	0.40	-3.1
2,041,031	-		BBR_RS19000	0.40	-0.1
2,041,031	-		BBR_RS19000	0.40	+0.9
2,041,033	+		BBR_RS19000	0.40	-1.8
2,041,041	-		BBR_RS19000	0.41	-0.6
2,041,054	+		BBR_RS19000	0.42	-2.9
2,041,064	-		BBR_RS19000	0.43	-2.7
2,041,064	-		BBR_RS19000	0.43	-0.4
2,041,075	+		BBR_RS19000	0.44	-0.5
2,041,096	-		BBR_RS19000	0.47	-0.3
2,041,103	+		BBR_RS19000	0.47	+0.9
2,041,103	+		BBR_RS19000	0.47	-0.2
2,041,108	+		BBR_RS19000	0.48	-1.5
2,041,111	-		BBR_RS19000	0.48	+1.7
2,041,114	+		BBR_RS19000	0.48	+1.8
2,041,116	-		BBR_RS19000	0.48	+1.3
2,041,116	-		BBR_RS19000	0.48	-1.7
2,041,119	+		BBR_RS19000	0.49	-0.4
2,041,175	-		BBR_RS19000	0.54	+1.5
2,041,182	-		BBR_RS19000	0.55	+0.7
2,041,188	-		BBR_RS19000	0.56	-0.7
2,041,205	-		BBR_RS19000	0.57	+1.0
2,041,205	-		BBR_RS19000	0.57	+0.6
2,041,214	-		BBR_RS19000	0.58	-2.6
2,041,227	-		BBR_RS19000	0.59	+0.6
2,041,227	-		BBR_RS19000	0.59	+0.5
2,041,237	-		BBR_RS19000	0.60	-2.1
2,041,256	+		BBR_RS19000	0.62	-1.5
2,041,262	-		BBR_RS19000	0.63	+0.8
2,041,278	-		BBR_RS19000	0.64	+0.6
2,041,278	-		BBR_RS19000	0.64	+1.7
2,041,286	+		BBR_RS19000	0.65	-0.4
2,041,288	+		BBR_RS19000	0.65	+1.1
2,041,294	-		BBR_RS19000	0.66	+0.2
2,041,309	+		BBR_RS19000	0.67	+0.1
2,041,309	+		BBR_RS19000	0.67	-0.3
2,041,309	+		BBR_RS19000	0.67	+0.2
2,041,309	+		BBR_RS19000	0.67	+0.5
2,041,309	+		BBR_RS19000	0.67	+1.5
2,041,311	-		BBR_RS19000	0.68	+0.1
2,041,311	-		BBR_RS19000	0.68	+0.9
2,041,315	+		BBR_RS19000	0.68	-0.3
2,041,317	-		BBR_RS19000	0.68	+0.1
2,041,317	-		BBR_RS19000	0.68	+1.2
2,041,317	-		BBR_RS19000	0.68	-0.9
2,041,317	-		BBR_RS19000	0.68	+1.1
2,041,317	-		BBR_RS19000	0.68	+0.7
2,041,343	+		BBR_RS19000	0.71	-0.7
2,041,351	+		BBR_RS19000	0.72	-0.1
2,041,359	+		BBR_RS19000	0.72	+1.6
2,041,359	+		BBR_RS19000	0.72	-1.9
2,041,361	+		BBR_RS19000	0.73	+1.4
2,041,384	-		BBR_RS19000	0.75	+1.2
2,041,387	+		BBR_RS19000	0.75	-1.3
2,041,393	-		BBR_RS19000	0.76	+0.3
2,041,393	-		BBR_RS19000	0.76	-0.9
2,041,464	+		BBR_RS19000	0.83	+0.2
2,041,479	+		BBR_RS19000	0.84	+1.1
2,041,485	+		BBR_RS19000	0.85	+1.1
2,041,491	-		BBR_RS19000	0.85	-2.3
2,041,521	+		BBR_RS19000	0.88	-0.9
2,041,533	+		BBR_RS19000	0.89	+0.2
2,041,538	+				+0.8
2,041,538	+				-0.3
2,041,541	-				+1.2
2,041,541	-				+1.7
2,041,545	+				-0.7
2,041,545	+				-0.3
2,041,553	-				+1.1
2,041,554	+				+0.1
2,041,554	+				-0.9
2,041,576	+				+0.5
2,041,576	+				+0.1
2,041,591	-				-0.1
2,041,591	-				+1.8