Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3140

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3138 and DvMF_3139 are separated by 6 nucleotidesDvMF_3139 and DvMF_3140 are separated by 335 nucleotidesDvMF_3140 and DvMF_3141 are separated by 473 nucleotides DvMF_3138: DvMF_3138 - cobalt ABC transporter, inner membrane subunit CbiQ (RefSeq), at 3,957,986 to 3,958,783 _3138 DvMF_3139: DvMF_3139 - cobalt transport protein CbiM (RefSeq), at 3,958,790 to 3,959,404 _3139 DvMF_3140: DvMF_3140 - Citrate transporter (RefSeq), at 3,959,740 to 3,961,173 _3140 DvMF_3141: DvMF_3141 - tRNA guanosine-2'-O-methyltransferase (RefSeq), at 3,961,647 to 3,962,210 _3141 Position (kb) 3959 3960 3961 3962Strain fitness (log2 ratio) -2 -1 0 1at 3958.832 kb on + strandat 3959.000 kb on + strand, within DvMF_3139at 3959.083 kb on - strand, within DvMF_3139at 3959.124 kb on + strand, within DvMF_3139at 3959.399 kb on + strandat 3959.474 kb on + strandat 3959.629 kb on + strandat 3959.652 kb on + strandat 3959.750 kb on - strandat 3961.566 kb on - strandat 3961.693 kb on + strandat 3961.779 kb on - strand, within DvMF_3141at 3961.789 kb on - strand, within DvMF_3141at 3962.067 kb on + strand, within DvMF_3141

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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3,958,832 + -0.6
3,959,000 + DvMF_3139 0.34 +1.5
3,959,083 - DvMF_3139 0.48 -0.4
3,959,124 + DvMF_3139 0.54 -0.9
3,959,399 + -0.8
3,959,474 + -2.0
3,959,629 + -0.2
3,959,652 + -0.5
3,959,750 - -0.2
3,961,566 - -0.4
3,961,693 + -0.8
3,961,779 - DvMF_3141 0.23 -0.4
3,961,789 - DvMF_3141 0.25 -0.8
3,962,067 + DvMF_3141 0.74 -0.8

Or see this region's nucleotide sequence