Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3070

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3068 and DvMF_3069 are separated by 101 nucleotidesDvMF_3069 and DvMF_3070 are separated by 147 nucleotidesDvMF_3070 and DvMF_3071 are separated by 467 nucleotides DvMF_3068: DvMF_3068 - hypothetical protein (RefSeq), at 3,874,640 to 3,875,017 _3068 DvMF_3069: DvMF_3069 - hypothetical protein (RefSeq), at 3,875,119 to 3,875,436 _3069 DvMF_3070: DvMF_3070 - hypothetical protein (RefSeq), at 3,875,584 to 3,876,147 _3070 DvMF_3071: DvMF_3071 - type IV pilus assembly PilZ (RefSeq), at 3,876,615 to 3,877,106 _3071 Position (kb) 3875 3876 3877Strain fitness (log2 ratio) -2 -1 0 1at 3874.663 kb on - strandat 3874.701 kb on + strand, within DvMF_3068at 3874.946 kb on + strand, within DvMF_3068at 3875.035 kb on + strandat 3875.054 kb on + strandat 3875.356 kb on + strand, within DvMF_3069at 3875.382 kb on + strand, within DvMF_3069at 3875.421 kb on + strandat 3875.469 kb on - strandat 3875.560 kb on - strandat 3875.708 kb on - strand, within DvMF_3070at 3875.741 kb on - strand, within DvMF_3070at 3875.741 kb on - strand, within DvMF_3070at 3875.984 kb on + strand, within DvMF_3070at 3876.205 kb on - strandat 3876.346 kb on + strandat 3876.379 kb on + strandat 3876.865 kb on + strand, within DvMF_3071

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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3,874,663 - -0.3
3,874,701 + DvMF_3068 0.16 -0.4
3,874,946 + DvMF_3068 0.81 -0.0
3,875,035 + -0.1
3,875,054 + -0.6
3,875,356 + DvMF_3069 0.75 -0.1
3,875,382 + DvMF_3069 0.83 -0.3
3,875,421 + -0.7
3,875,469 - -0.7
3,875,560 - +1.1
3,875,708 - DvMF_3070 0.22 -2.4
3,875,741 - DvMF_3070 0.28 -1.8
3,875,741 - DvMF_3070 0.28 -2.4
3,875,984 + DvMF_3070 0.71 -2.1
3,876,205 - -0.5
3,876,346 + -0.4
3,876,379 + +1.7
3,876,865 + DvMF_3071 0.51 +0.9

Or see this region's nucleotide sequence