Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2730

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2728 and DvMF_2729 are separated by 79 nucleotidesDvMF_2729 and DvMF_2730 are separated by 91 nucleotidesDvMF_2730 and DvMF_2731 are separated by 179 nucleotides DvMF_2728: DvMF_2728 - magnesium chelatase ChlI subunit (RefSeq), at 3,452,644 to 3,453,618 _2728 DvMF_2729: DvMF_2729 - hypothetical protein (RefSeq), at 3,453,698 to 3,454,342 _2729 DvMF_2730: DvMF_2730 - hypothetical protein (RefSeq), at 3,454,434 to 3,454,952 _2730 DvMF_2731: DvMF_2731 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 3,455,132 to 3,458,155 _2731 Position (kb) 3454 3455Strain fitness (log2 ratio) -2 -1 0 1at 3453.558 kb on - strandat 3453.588 kb on - strandat 3453.625 kb on + strandat 3453.633 kb on - strandat 3453.759 kb on - strandat 3453.807 kb on - strand, within DvMF_2729at 3454.031 kb on + strand, within DvMF_2729at 3454.044 kb on - strand, within DvMF_2729at 3454.062 kb on + strand, within DvMF_2729at 3454.062 kb on + strand, within DvMF_2729at 3454.118 kb on + strand, within DvMF_2729at 3454.126 kb on - strand, within DvMF_2729at 3454.300 kb on + strandat 3454.319 kb on + strandat 3454.340 kb on - strandat 3454.813 kb on + strand, within DvMF_2730at 3454.996 kb on - strandat 3455.030 kb on - strandat 3455.180 kb on - strandat 3455.196 kb on + strandat 3455.382 kb on + strandat 3455.630 kb on - strand, within DvMF_2731at 3455.669 kb on - strand, within DvMF_2731at 3455.741 kb on + strand, within DvMF_2731at 3455.746 kb on + strand, within DvMF_2731at 3455.928 kb on - strand, within DvMF_2731

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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3,453,558 - -0.7
3,453,588 - -0.2
3,453,625 + -0.2
3,453,633 - +0.0
3,453,759 - -0.1
3,453,807 - DvMF_2729 0.17 +0.4
3,454,031 + DvMF_2729 0.52 +0.1
3,454,044 - DvMF_2729 0.54 -0.3
3,454,062 + DvMF_2729 0.56 +0.2
3,454,062 + DvMF_2729 0.56 -0.3
3,454,118 + DvMF_2729 0.65 -0.1
3,454,126 - DvMF_2729 0.66 +0.1
3,454,300 + -0.1
3,454,319 + -0.0
3,454,340 - -1.9
3,454,813 + DvMF_2730 0.73 +0.2
3,454,996 - -0.1
3,455,030 - -0.4
3,455,180 - -0.2
3,455,196 + -1.0
3,455,382 + -0.4
3,455,630 - DvMF_2731 0.16 -0.3
3,455,669 - DvMF_2731 0.18 -0.0
3,455,741 + DvMF_2731 0.20 -0.7
3,455,746 + DvMF_2731 0.20 -0.5
3,455,928 - DvMF_2731 0.26 -0.4

Or see this region's nucleotide sequence