Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2082

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2081 and DvMF_2082 are separated by 139 nucleotidesDvMF_2082 and DvMF_2083 are separated by 331 nucleotides DvMF_2081: DvMF_2081 - chromosomal replication initiator protein DnaA (RefSeq), at 2,588,354 to 2,589,688 _2081 DvMF_2082: DvMF_2082 - DNA polymerase III, beta subunit (RefSeq), at 2,589,828 to 2,590,994 _2082 DvMF_2083: DvMF_2083 - DNA gyrase, B subunit (RefSeq), at 2,591,326 to 2,593,722 _2083 Position (kb) 2589 2590 2591Strain fitness (log2 ratio) -1 0 1 2at 2589.071 kb on + strand, within DvMF_2081at 2589.079 kb on - strand, within DvMF_2081at 2589.433 kb on + strand, within DvMF_2081at 2589.580 kb on - strandat 2589.692 kb on + strandat 2591.093 kb on + strandat 2591.135 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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2,589,071 + DvMF_2081 0.54 +1.0
2,589,079 - DvMF_2081 0.54 +1.1
2,589,433 + DvMF_2081 0.81 +1.8
2,589,580 - +1.4
2,589,692 + +0.9
2,591,093 + -0.8
2,591,135 - +0.4

Or see this region's nucleotide sequence