Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1906

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1905 and DvMF_1906 are separated by 222 nucleotidesDvMF_1906 and DvMF_1907 are separated by 91 nucleotides DvMF_1905: DvMF_1905 - hypothetical protein (RefSeq), at 2,345,540 to 2,347,201 _1905 DvMF_1906: DvMF_1906 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,347,424 to 2,348,740 _1906 DvMF_1907: DvMF_1907 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 2,348,832 to 2,351,996 _1907 Position (kb) 2347 2348 2349Strain fitness (log2 ratio) -1 0 1 2at 2346.499 kb on + strand, within DvMF_1905at 2346.613 kb on - strand, within DvMF_1905at 2346.696 kb on + strand, within DvMF_1905at 2346.696 kb on + strand, within DvMF_1905at 2346.740 kb on - strand, within DvMF_1905at 2347.415 kb on - strandat 2347.827 kb on - strand, within DvMF_1906at 2348.552 kb on + strand, within DvMF_1906at 2348.742 kb on - strandat 2348.742 kb on - strandat 2348.742 kb on - strandat 2349.100 kb on - strandat 2349.148 kb on - strandat 2349.486 kb on + strand, within DvMF_1907at 2349.517 kb on + strand, within DvMF_1907at 2349.596 kb on + strand, within DvMF_1907at 2349.604 kb on - strand, within DvMF_1907at 2349.635 kb on - strand, within DvMF_1907at 2349.722 kb on + strand, within DvMF_1907

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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2,346,499 + DvMF_1905 0.58 +1.1
2,346,613 - DvMF_1905 0.65 +1.2
2,346,696 + DvMF_1905 0.70 +1.3
2,346,696 + DvMF_1905 0.70 +1.8
2,346,740 - DvMF_1905 0.72 +1.9
2,347,415 - -0.4
2,347,827 - DvMF_1906 0.31 +0.4
2,348,552 + DvMF_1906 0.86 -1.1
2,348,742 - -0.5
2,348,742 - -1.3
2,348,742 - +0.6
2,349,100 - -0.5
2,349,148 - -0.2
2,349,486 + DvMF_1907 0.21 -0.4
2,349,517 + DvMF_1907 0.22 -0.0
2,349,596 + DvMF_1907 0.24 -0.4
2,349,604 - DvMF_1907 0.24 +0.6
2,349,635 - DvMF_1907 0.25 -0.1
2,349,722 + DvMF_1907 0.28 -0.3

Or see this region's nucleotide sequence