Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1861

Experiment: MoYLS4 media with NH4 no edta

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1860 and DvMF_1861 are separated by 122 nucleotidesDvMF_1861 and DvMF_1862 are separated by 170 nucleotides DvMF_1860: DvMF_1860 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (RefSeq), at 2,277,836 to 2,281,483 _1860 DvMF_1861: DvMF_1861 - L-lactate permease (RefSeq), at 2,281,606 to 2,283,315 _1861 DvMF_1862: DvMF_1862 - FAD linked oxidase domain protein (RefSeq), at 2,283,486 to 2,284,871 _1862 Position (kb) 2281 2282 2283 2284Strain fitness (log2 ratio) -3 -2 -1 0 1at 2281.707 kb on + strandat 2282.813 kb on - strand, within DvMF_1861at 2282.908 kb on + strand, within DvMF_1861at 2283.419 kb on + strandat 2283.419 kb on + strandat 2283.674 kb on + strand, within DvMF_1862at 2283.727 kb on + strand, within DvMF_1862at 2283.971 kb on + strand, within DvMF_1862at 2284.226 kb on + strand, within DvMF_1862

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
remove
2,281,707 + -1.9
2,282,813 - DvMF_1861 0.71 -1.8
2,282,908 + DvMF_1861 0.76 -0.8
2,283,419 + -1.6
2,283,419 + -1.6
2,283,674 + DvMF_1862 0.14 -1.1
2,283,727 + DvMF_1862 0.17 -1.7
2,283,971 + DvMF_1862 0.35 -2.9
2,284,226 + DvMF_1862 0.53 -1.9

Or see this region's nucleotide sequence