Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1180 and DvMF_1181 are separated by 345 nucleotides DvMF_1181 and DvMF_1182 are separated by 31 nucleotides DvMF_1182 and DvMF_1183 are separated by 15 nucleotides DvMF_1183 and DvMF_R0036 are separated by 22 nucleotides
DvMF_1180: DvMF_1180 - hypothetical protein (RefSeq), at 1,458,669 to 1,459,139
_1180
DvMF_1181: DvMF_1181 - UDP-N-acetylglucosamine pyrophosphorylase (RefSeq), at 1,459,485 to 1,460,852
_1181
DvMF_1182: DvMF_1182 - hypothetical protein (RefSeq), at 1,460,884 to 1,461,120
_1182
DvMF_1183: DvMF_1183 - hypothetical protein (RefSeq), at 1,461,136 to 1,461,399
_1183
DvMF_R0036: DvMF_R0036 - 6S RNA (RefSeq), at 1,461,422 to 1,461,607
_R0036
Position (kb)
1459
1460
1461 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1458.497 kb on - strand at 1458.532 kb on + strand at 1458.533 kb on - strand at 1458.630 kb on + strand at 1458.864 kb on - strand, within DvMF_1180 at 1459.142 kb on + strand at 1459.355 kb on - strand at 1459.355 kb on - strand at 1459.355 kb on - strand at 1460.934 kb on + strand, within DvMF_1182 at 1461.283 kb on + strand, within DvMF_1183 at 1461.659 kb on + strand at 1461.659 kb on + strand at 1461.814 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 1,458,497 - -0.4 1,458,532 + -0.1 1,458,533 - -0.2 1,458,630 + -0.4 1,458,864 - DvMF_1180 0.41 +0.2 1,459,142 + +0.1 1,459,355 - -2.1 1,459,355 - -0.0 1,459,355 - -0.1 1,460,934 + DvMF_1182 0.21 -2.1 1,461,283 + DvMF_1183 0.56 -3.8 1,461,659 + -2.8 1,461,659 + -0.7 1,461,814 + -0.6
Or see this region's nucleotide sequence