Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0824 and DvMF_0825 are separated by 293 nucleotides DvMF_0825 and DvMF_0826 are separated by 467 nucleotides DvMF_0826 and DvMF_0827 overlap by 8 nucleotides DvMF_0827 and DvMF_0828 are separated by 290 nucleotides
DvMF_0824: DvMF_0824 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 994,692 to 996,542
_0824
DvMF_0825: DvMF_0825 - hypothetical protein (RefSeq), at 996,836 to 997,072
_0825
DvMF_0826: DvMF_0826 - cytochrome c assembly protein (RefSeq), at 997,540 to 999,438
_0826
DvMF_0827: DvMF_0827 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 999,431 to 1,000,003
_0827
DvMF_0828: DvMF_0828 - hypothetical protein (RefSeq), at 1,000,294 to 1,000,659
_0828
Position (kb) 997
998
999
1000 Strain fitness (log2 ratio) -1
0
1 at 996.749 kb on + strand at 997.090 kb on + strand at 997.204 kb on - strand at 997.224 kb on - strand at 997.229 kb on - strand at 997.312 kb on + strand at 997.335 kb on - strand at 997.379 kb on + strand at 997.527 kb on - strand at 997.715 kb on - strand at 997.768 kb on + strand, within DvMF_0826 at 997.779 kb on + strand, within DvMF_0826 at 997.797 kb on + strand, within DvMF_0826 at 997.802 kb on + strand, within DvMF_0826 at 997.966 kb on + strand, within DvMF_0826 at 998.050 kb on + strand, within DvMF_0826 at 998.224 kb on - strand, within DvMF_0826 at 998.376 kb on - strand, within DvMF_0826 at 998.527 kb on - strand, within DvMF_0826 at 998.858 kb on + strand, within DvMF_0826 at 998.948 kb on - strand, within DvMF_0826 at 998.986 kb on + strand, within DvMF_0826 at 999.115 kb on + strand, within DvMF_0826 at 999.207 kb on - strand, within DvMF_0826 at 999.308 kb on + strand at 999.954 kb on - strand at 1000.103 kb on - strand at 1000.108 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 996,749 + -0.8 997,090 + +1.6 997,204 - -0.7 997,224 - -0.7 997,229 - +0.6 997,312 + -0.5 997,335 - -0.4 997,379 + -0.9 997,527 - -0.5 997,715 - -0.5 997,768 + DvMF_0826 0.12 -0.2 997,779 + DvMF_0826 0.13 -0.5 997,797 + DvMF_0826 0.14 -0.3 997,802 + DvMF_0826 0.14 -0.4 997,966 + DvMF_0826 0.22 -0.8 998,050 + DvMF_0826 0.27 -0.0 998,224 - DvMF_0826 0.36 -1.2 998,376 - DvMF_0826 0.44 +0.6 998,527 - DvMF_0826 0.52 -0.6 998,858 + DvMF_0826 0.69 -0.8 998,948 - DvMF_0826 0.74 -0.4 998,986 + DvMF_0826 0.76 -0.8 999,115 + DvMF_0826 0.83 +0.0 999,207 - DvMF_0826 0.88 -0.2 999,308 + -0.2 999,954 - +0.0 1,000,103 - -0.3 1,000,108 - -0.3
Or see this region's nucleotide sequence