Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0740 and DvMF_0741 are separated by 187 nucleotides DvMF_0741 and DvMF_0742 are separated by 3 nucleotides DvMF_0742 and DvMF_0743 are separated by 161 nucleotides
DvMF_0740: DvMF_0740 - Mu tail sheath family protein (RefSeq), at 886,626 to 888,047
_0740
DvMF_0741: DvMF_0741 - hypothetical protein (RefSeq), at 888,235 to 888,609
_0741
DvMF_0742: DvMF_0742 - hypothetical protein (RefSeq), at 888,613 to 888,942
_0742
DvMF_0743: DvMF_0743 - hypothetical protein (RefSeq), at 889,104 to 891,044
_0743
Position (kb) 888
889 Strain fitness (log2 ratio) -1
0
1 at 887.337 kb on - strand, within DvMF_0740 at 887.348 kb on + strand, within DvMF_0740 at 887.480 kb on - strand, within DvMF_0740 at 887.480 kb on - strand, within DvMF_0740 at 887.635 kb on - strand, within DvMF_0740 at 887.642 kb on - strand, within DvMF_0740 at 887.655 kb on - strand, within DvMF_0740 at 887.869 kb on + strand, within DvMF_0740 at 888.233 kb on - strand at 888.239 kb on - strand at 888.395 kb on - strand, within DvMF_0741 at 888.400 kb on - strand, within DvMF_0741 at 888.843 kb on + strand, within DvMF_0742 at 889.124 kb on + strand at 889.131 kb on - strand at 889.279 kb on - strand at 889.421 kb on + strand, within DvMF_0743 at 889.421 kb on + strand, within DvMF_0743 at 889.524 kb on - strand, within DvMF_0743
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 887,337 - DvMF_0740 0.50 -0.3 887,348 + DvMF_0740 0.51 -0.0 887,480 - DvMF_0740 0.60 -1.2 887,480 - DvMF_0740 0.60 -0.3 887,635 - DvMF_0740 0.71 -0.2 887,642 - DvMF_0740 0.71 -1.3 887,655 - DvMF_0740 0.72 -0.0 887,869 + DvMF_0740 0.87 +0.1 888,233 - -0.1 888,239 - -0.4 888,395 - DvMF_0741 0.43 -0.7 888,400 - DvMF_0741 0.44 -0.2 888,843 + DvMF_0742 0.70 +0.2 889,124 + +0.0 889,131 - +0.3 889,279 - -1.5 889,421 + DvMF_0743 0.16 -0.3 889,421 + DvMF_0743 0.16 +0.1 889,524 - DvMF_0743 0.22 -0.7
Or see this region's nucleotide sequence