Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0571

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0570 and DvMF_0571 are separated by 451 nucleotidesDvMF_0571 and DvMF_0572 are separated by 227 nucleotides DvMF_0570: DvMF_0570 - polysaccharide deacetylase (RefSeq), at 673,401 to 674,552 _0570 DvMF_0571: DvMF_0571 - outer membrane autotransporter barrel domain protein (RefSeq), at 675,004 to 676,917 _0571 DvMF_0572: DvMF_0572 - Threonine aldolase (RefSeq), at 677,145 to 678,170 _0572 Position (kb) 675 676 677Strain fitness (log2 ratio) -1 0 1at 674.942 kb on + strandat 675.046 kb on - strandat 675.124 kb on + strandat 675.148 kb on - strandat 675.349 kb on + strand, within DvMF_0571at 675.418 kb on + strand, within DvMF_0571at 675.441 kb on - strand, within DvMF_0571at 675.451 kb on - strand, within DvMF_0571at 675.494 kb on + strand, within DvMF_0571at 675.502 kb on - strand, within DvMF_0571at 675.690 kb on + strand, within DvMF_0571at 675.770 kb on + strand, within DvMF_0571at 675.805 kb on - strand, within DvMF_0571at 676.024 kb on - strand, within DvMF_0571at 676.039 kb on + strand, within DvMF_0571at 676.191 kb on + strand, within DvMF_0571at 676.420 kb on + strand, within DvMF_0571at 676.538 kb on + strand, within DvMF_0571at 676.546 kb on - strand, within DvMF_0571at 676.737 kb on - strandat 676.781 kb on + strandat 676.781 kb on + strandat 676.979 kb on - strandat 677.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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674,942 + -0.2
675,046 - -0.2
675,124 + -0.1
675,148 - -0.4
675,349 + DvMF_0571 0.18 -0.8
675,418 + DvMF_0571 0.22 -0.6
675,441 - DvMF_0571 0.23 -0.4
675,451 - DvMF_0571 0.23 -1.0
675,494 + DvMF_0571 0.26 -0.2
675,502 - DvMF_0571 0.26 -0.4
675,690 + DvMF_0571 0.36 -0.5
675,770 + DvMF_0571 0.40 -0.5
675,805 - DvMF_0571 0.42 -0.8
676,024 - DvMF_0571 0.53 -0.4
676,039 + DvMF_0571 0.54 -0.3
676,191 + DvMF_0571 0.62 -0.7
676,420 + DvMF_0571 0.74 -1.6
676,538 + DvMF_0571 0.80 -0.7
676,546 - DvMF_0571 0.81 -1.3
676,737 - -0.7
676,781 + -0.7
676,781 + -0.4
676,979 - -0.6
677,117 + -0.0

Or see this region's nucleotide sequence