Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0563 and DvMF_0564 are separated by 102 nucleotides DvMF_0564 and aspA overlap by 4 nucleotides aspA and DvMF_0566 are separated by 249 nucleotides
DvMF_0563: DvMF_0563 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 662,862 to 665,171
_0563
DvMF_0564: DvMF_0564 - cyclase family protein (RefSeq), at 665,274 to 666,008
_0564
DvMF_0565: aspA - aspartate ammonia-lyase (RefSeq), at 666,005 to 667,570
aspA
DvMF_0566: DvMF_0566 - peptidyl-prolyl cis-trans isomerase cyclophilin type (RefSeq), at 667,820 to 668,419
_0566
Position (kb) 666
667
668 Strain fitness (log2 ratio) -1
0
1 at 665.226 kb on + strand at 665.257 kb on + strand at 665.378 kb on - strand, within DvMF_0564 at 665.414 kb on + strand, within DvMF_0564 at 665.593 kb on + strand, within DvMF_0564 at 665.884 kb on - strand, within DvMF_0564 at 665.884 kb on - strand, within DvMF_0564 at 666.028 kb on + strand at 666.063 kb on - strand at 666.089 kb on + strand at 666.110 kb on - strand at 666.147 kb on + strand at 666.149 kb on + strand at 666.392 kb on - strand, within aspA at 666.711 kb on + strand, within aspA at 667.083 kb on - strand, within aspA at 667.276 kb on - strand, within aspA at 667.284 kb on + strand, within aspA at 667.377 kb on + strand, within aspA at 667.731 kb on + strand at 667.843 kb on - strand at 667.891 kb on + strand, within DvMF_0566 at 667.914 kb on + strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 667.922 kb on - strand, within DvMF_0566 at 668.064 kb on - strand, within DvMF_0566
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 665,226 + -0.6 665,257 + +0.5 665,378 - DvMF_0564 0.14 -0.9 665,414 + DvMF_0564 0.19 -0.1 665,593 + DvMF_0564 0.43 +0.1 665,884 - DvMF_0564 0.83 -0.3 665,884 - DvMF_0564 0.83 -0.4 666,028 + +0.1 666,063 - -0.2 666,089 + -0.1 666,110 - -1.1 666,147 + -1.0 666,149 + -0.7 666,392 - aspA DvMF_0565 0.25 -0.3 666,711 + aspA DvMF_0565 0.45 -0.1 667,083 - aspA DvMF_0565 0.69 -0.6 667,276 - aspA DvMF_0565 0.81 -0.6 667,284 + aspA DvMF_0565 0.82 -0.6 667,377 + aspA DvMF_0565 0.88 -1.0 667,731 + -0.1 667,843 - -0.1 667,891 + DvMF_0566 0.12 -0.9 667,914 + DvMF_0566 0.16 -0.6 667,922 - DvMF_0566 0.17 -0.8 667,922 - DvMF_0566 0.17 -0.3 667,922 - DvMF_0566 0.17 -1.1 668,064 - DvMF_0566 0.41 -0.8
Or see this region's nucleotide sequence