Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0177 and DvMF_0178 are separated by 166 nucleotides DvMF_0178 and DvMF_0179 are separated by 300 nucleotides DvMF_0179 and DvMF_0180 are separated by 267 nucleotides
DvMF_0177: DvMF_0177 - Lytic transglycosylase catalytic (RefSeq), at 193,386 to 194,675
_0177
DvMF_0178: DvMF_0178 - outer membrane chaperone Skp (OmpH) (RefSeq), at 194,842 to 195,351
_0178
DvMF_0179: DvMF_0179 - hypothetical protein (RefSeq), at 195,652 to 196,503
_0179
DvMF_0180: DvMF_0180 - hypothetical protein (RefSeq), at 196,771 to 197,655
_0180
Position (kb) 195
196
197 Strain fitness (log2 ratio) -1
0
1 at 194.669 kb on + strand at 194.736 kb on - strand at 194.929 kb on + strand, within DvMF_0178 at 194.986 kb on - strand, within DvMF_0178 at 195.132 kb on + strand, within DvMF_0178 at 195.470 kb on + strand at 195.470 kb on + strand at 195.531 kb on - strand at 195.547 kb on + strand at 195.552 kb on + strand at 195.770 kb on - strand, within DvMF_0179 at 195.871 kb on + strand, within DvMF_0179 at 196.162 kb on - strand, within DvMF_0179 at 196.177 kb on + strand, within DvMF_0179 at 196.185 kb on - strand, within DvMF_0179 at 196.492 kb on + strand at 196.547 kb on + strand at 196.692 kb on + strand at 196.700 kb on - strand at 196.790 kb on + strand at 196.798 kb on - strand at 196.915 kb on - strand, within DvMF_0180 at 196.920 kb on - strand, within DvMF_0180 at 197.269 kb on + strand, within DvMF_0180 at 197.454 kb on + strand, within DvMF_0180 at 197.472 kb on - strand, within DvMF_0180 at 197.472 kb on - strand, within DvMF_0180
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 194,669 + -0.1 194,736 - +0.0 194,929 + DvMF_0178 0.17 -0.5 194,986 - DvMF_0178 0.28 -1.5 195,132 + DvMF_0178 0.57 -0.5 195,470 + -0.4 195,470 + -0.7 195,531 - -0.4 195,547 + -0.4 195,552 + +0.2 195,770 - DvMF_0179 0.14 -1.2 195,871 + DvMF_0179 0.26 -0.9 196,162 - DvMF_0179 0.60 -1.3 196,177 + DvMF_0179 0.62 -0.3 196,185 - DvMF_0179 0.63 -0.4 196,492 + +0.2 196,547 + -0.5 196,692 + -0.6 196,700 - -0.7 196,790 + -0.6 196,798 - -0.4 196,915 - DvMF_0180 0.16 -0.3 196,920 - DvMF_0180 0.17 -0.5 197,269 + DvMF_0180 0.56 -0.4 197,454 + DvMF_0180 0.77 +0.2 197,472 - DvMF_0180 0.79 -0.3 197,472 - DvMF_0180 0.79 -0.5
Or see this region's nucleotide sequence