Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3381

Experiment: BHIS with Thioridazine 0.0125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Thioridazine 0.0125 mM
4,357,057	+		BT3380	0.46	-1.8
4,357,082	+		BT3380	0.48	+1.0
4,357,093	+		BT3380	0.48	+1.0
4,357,100	+		BT3380	0.49	+1.6
4,357,100	+		BT3380	0.49	-0.9
4,357,101	-		BT3380	0.49	-0.3
4,357,116	-		BT3380	0.50	-2.0
4,357,129	+		BT3380	0.51	-1.3
4,357,264	-		BT3380	0.61	-1.0
4,357,285	+		BT3380	0.63	-1.0
4,357,286	-		BT3380	0.63	-0.0
4,357,319	+		BT3380	0.65	-1.3
4,357,345	-		BT3380	0.67	+2.0
4,357,360	-		BT3380	0.69	-0.4
4,357,514	-		BT3380	0.80	-1.2
4,357,534	-		BT3380	0.82	+1.5
4,357,547	+		BT3380	0.83	+1.0
4,357,598	+		BT3380	0.86	-1.1
4,357,600	+		BT3380	0.87	-1.6
4,357,600	+		BT3380	0.87	-1.3
4,357,601	-		BT3380	0.87	-2.0
4,357,601	-		BT3380	0.87	-0.6
4,357,601	-		BT3380	0.87	+2.0
4,357,601	-		BT3380	0.87	+1.0
4,357,611	+		BT3380	0.87	-1.5
4,357,612	-		BT3380	0.87	-0.0
4,357,612	-		BT3380	0.87	-1.8
4,357,647	+				-0.7
4,357,648	-				-0.0
4,357,648	-				-1.3
4,357,678	-				-0.3
4,357,735	-				-0.0
4,357,792	+				-0.0
4,357,792	+				-1.0
4,357,796	-				+1.0
4,357,893	-				-1.2
4,357,893	-				-2.5
4,357,899	-				-1.6
4,357,906	+				-0.0
4,357,940	-				-1.0
4,357,982	+				-1.7
4,357,985	-				-2.2
4,357,985	-				-0.4
4,358,068	-				-0.3
4,358,199	-		BT3381	0.15	-1.2
4,358,199	-		BT3381	0.15	-0.0
4,358,201	-		BT3381	0.15	+1.8
4,358,240	+		BT3381	0.17	-1.1
4,358,254	-		BT3381	0.18	-2.5
4,358,254	-		BT3381	0.18	+0.7
4,358,254	-		BT3381	0.18	-1.1
4,358,274	-		BT3381	0.19	-1.4
4,358,274	-		BT3381	0.19	+1.2
4,358,276	-		BT3381	0.19	-0.0
4,358,322	-		BT3381	0.22	+0.7
4,358,322	-		BT3381	0.22	-1.7
4,358,326	-		BT3381	0.22	-1.0
4,358,345	+		BT3381	0.23	-1.8
4,358,345	+		BT3381	0.23	-1.2
4,358,345	+		BT3381	0.23	-1.2
4,358,376	-		BT3381	0.25	-1.2
4,358,507	+		BT3381	0.33	-0.6
4,358,507	+		BT3381	0.33	-0.0
4,358,508	-		BT3381	0.33	+0.3
4,358,509	+		BT3381	0.33	-0.8
4,358,551	+		BT3381	0.35	-2.3
4,358,552	-		BT3381	0.35	-0.0
4,358,560	+		BT3381	0.36	-1.2
4,358,599	+		BT3381	0.38	-3.3
4,358,599	+		BT3381	0.38	-1.0
4,358,608	+		BT3381	0.39	+0.4
4,358,613	-		BT3381	0.39	+1.0
4,358,627	+		BT3381	0.40	-0.4
4,358,628	-		BT3381	0.40	-2.3
4,358,628	-		BT3381	0.40	-1.0
4,358,631	-		BT3381	0.40	-0.6
4,358,631	-		BT3381	0.40	-0.0
4,358,632	+		BT3381	0.40	-1.3
4,358,633	-		BT3381	0.40	-1.3
4,358,633	-		BT3381	0.40	-1.1
4,358,633	-		BT3381	0.40	-2.0
4,358,735	-		BT3381	0.46	+2.6
4,358,743	-		BT3381	0.46	-0.3
4,358,796	-		BT3381	0.50	+1.0
4,358,797	+		BT3381	0.50	-0.4
4,358,797	+		BT3381	0.50	-1.6
4,358,797	+		BT3381	0.50	+1.3
4,358,798	-		BT3381	0.50	-2.4
4,358,798	-		BT3381	0.50	-0.0
4,358,807	-		BT3381	0.50	+0.4
4,358,807	-		BT3381	0.50	-0.0
4,358,810	-		BT3381	0.50	+2.3
4,358,815	+		BT3381	0.51	+0.3
4,358,837	+		BT3381	0.52	-2.8
4,358,870	+		BT3381	0.54	-3.5
4,358,871	-		BT3381	0.54	-2.8
4,358,871	-		BT3381	0.54	-0.6
4,358,875	+		BT3381	0.54	-1.6
4,358,876	-		BT3381	0.54	-2.0
4,358,901	+		BT3381	0.56	-1.1
4,358,901	+		BT3381	0.56	-1.2
4,358,902	-		BT3381	0.56	-2.8
4,358,921	-		BT3381	0.57	-1.1
4,358,929	-		BT3381	0.57	-0.0
4,358,938	+		BT3381	0.58	-1.6
4,358,941	-		BT3381	0.58	-0.0
4,358,953	+		BT3381	0.59	-2.3
4,358,954	-		BT3381	0.59	-1.5
4,358,954	-		BT3381	0.59	-3.2
4,358,972	-		BT3381	0.60	-0.0
4,358,990	+		BT3381	0.61	-0.3
4,359,007	+		BT3381	0.62	-1.6
4,359,008	-		BT3381	0.62	-3.3
4,359,010	-		BT3381	0.62	-1.8
4,359,010	-		BT3381	0.62	-1.6
4,359,016	+		BT3381	0.62	+0.7
4,359,084	+		BT3381	0.66	-1.6
4,359,109	+		BT3381	0.68	-2.0
4,359,109	+		BT3381	0.68	-3.3
4,359,110	-		BT3381	0.68	-2.8
4,359,110	-		BT3381	0.68	-1.2
4,359,154	-		BT3381	0.70	-0.0
4,359,177	+		BT3381	0.72	-4.3
4,359,177	+		BT3381	0.72	-0.9
4,359,178	-		BT3381	0.72	-2.3
4,359,191	+		BT3381	0.72	+0.6
4,359,320	+		BT3381	0.80	+0.4
4,359,335	-		BT3381	0.81	-1.0
4,359,413	-		BT3381	0.85	-2.6
4,359,465	+		BT3381	0.88	-2.0
4,359,465	+		BT3381	0.88	+2.4
4,359,466	-		BT3381	0.88	+2.6
4,359,466	-		BT3381	0.88	+0.2
4,359,476	-		BT3381	0.89	-1.3
4,359,525	-				-1.9
4,359,525	-				-2.8
4,359,606	-				-0.7
4,359,653	-				+2.0
4,359,768	+				-1.6
4,359,803	-				-1.8
4,359,839	-				-1.1
4,359,839	-				-2.7
4,359,872	+				-2.5
4,359,873	-		BT3382	0.10	-1.5
4,359,874	+		BT3382	0.10	-1.7
4,359,895	+		BT3382	0.11	-2.3
4,359,896	-		BT3382	0.11	-5.2
4,359,896	-		BT3382	0.11	+0.6
4,359,896	-		BT3382	0.11	-2.6
4,359,906	+		BT3382	0.12	-2.8
4,359,912	+		BT3382	0.12	+1.2
4,359,931	+		BT3382	0.13	+2.8
4,359,932	-		BT3382	0.13	+0.4
4,359,932	-		BT3382	0.13	-0.9
4,359,938	-		BT3382	0.14	-1.7
4,359,952	+		BT3382	0.15	-2.7
4,359,952	+		BT3382	0.15	-1.7
4,359,953	-		BT3382	0.15	-1.0
4,360,009	+		BT3382	0.18	-0.9
4,360,010	-		BT3382	0.18	-3.3
4,360,010	-		BT3382	0.18	-0.0
4,360,102	+		BT3382	0.23	-3.3
4,360,103	-		BT3382	0.23	-0.7
4,360,103	-		BT3382	0.23	-2.2
4,360,169	+		BT3382	0.27	-2.6
4,360,237	+		BT3382	0.31	+0.6
4,360,238	-		BT3382	0.31	-3.7
4,360,238	-		BT3382	0.31	-0.3
4,360,246	-		BT3382	0.31	-1.0
4,360,260	+		BT3382	0.32	+0.8
4,360,260	+		BT3382	0.32	-0.0
4,360,261	-		BT3382	0.32	-1.9
4,360,266	+		BT3382	0.32	-1.8
4,360,267	-		BT3382	0.33	-0.0
4,360,270	+		BT3382	0.33	-1.2
4,360,270	+		BT3382	0.33	-0.0
4,360,271	-		BT3382	0.33	+2.8
4,360,271	-		BT3382	0.33	-1.3
4,360,337	+		BT3382	0.37	-1.3
4,360,351	+		BT3382	0.37	-1.0
4,360,352	-		BT3382	0.37	+0.3
4,360,352	-		BT3382	0.37	-0.6
4,360,359	-		BT3382	0.38	-1.0
4,360,366	+		BT3382	0.38	+1.6
4,360,367	-		BT3382	0.38	-3.9
4,360,386	+		BT3382	0.39	-2.0
4,360,401	+		BT3382	0.40	-0.0
4,360,411	+		BT3382	0.41	+2.3
4,360,417	+		BT3382	0.41	-2.2
4,360,429	+		BT3382	0.42	-2.0
4,360,429	+		BT3382	0.42	+2.2
4,360,433	+		BT3382	0.42	-1.8
4,360,522	-		BT3382	0.47	-2.7
4,360,553	-		BT3382	0.49	-1.0
4,360,556	+		BT3382	0.49	-2.1
4,360,557	-		BT3382	0.49	+2.0
4,360,557	-		BT3382	0.49	-0.6
4,360,562	-		BT3382	0.49	-0.5
4,360,562	-		BT3382	0.49	-0.0
4,360,565	-		BT3382	0.50	-1.0
4,360,565	-		BT3382	0.50	-0.9
4,360,576	+		BT3382	0.50	-0.4
4,360,576	+		BT3382	0.50	+3.1
4,360,576	+		BT3382	0.50	-1.6
4,360,580	+		BT3382	0.50	+3.3
4,360,590	+		BT3382	0.51	-3.0
4,360,597	+		BT3382	0.51	-0.2
4,360,610	+		BT3382	0.52	+1.3
4,360,610	+		BT3382	0.52	-0.7
4,360,610	+		BT3382	0.52	-2.7