Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0290

Experiment: BHIS with Thioridazine 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0289 and BT0290 are separated by 317 nucleotidesBT0290 and BT0291 are separated by 202 nucleotides BT0289: BT0289 - conserved hypothetical protein (NCBI ptt file), at 334,208 to 336,898 BT0289 BT0290: BT0290 - beta-galactosidase precursor (NCBI ptt file), at 337,216 to 339,555 BT0290 BT0291: BT0291 - integrase (NCBI ptt file), at 339,758 to 340,723 BT0291 Position (kb) 337 338 339 340Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 336.242 kb on - strand, within BT0289at 336.405 kb on - strand, within BT0289at 336.475 kb on + strand, within BT0289at 336.479 kb on - strand, within BT0289at 336.480 kb on + strand, within BT0289at 336.491 kb on - strand, within BT0289at 336.570 kb on - strand, within BT0289at 336.579 kb on - strand, within BT0289at 336.620 kb on - strand, within BT0289at 336.720 kb on - strandat 336.728 kb on - strandat 336.752 kb on + strandat 336.797 kb on - strandat 336.845 kb on - strandat 336.853 kb on - strandat 336.878 kb on + strandat 336.990 kb on + strandat 336.990 kb on + strandat 337.045 kb on + strandat 337.046 kb on - strandat 337.052 kb on - strandat 337.180 kb on - strandat 337.193 kb on - strandat 337.193 kb on - strandat 337.210 kb on + strandat 337.211 kb on - strandat 337.229 kb on + strandat 337.234 kb on + strandat 337.315 kb on - strandat 337.570 kb on + strand, within BT0290at 337.570 kb on + strand, within BT0290at 337.657 kb on + strand, within BT0290at 337.763 kb on - strand, within BT0290at 337.794 kb on - strand, within BT0290at 337.815 kb on - strand, within BT0290at 337.845 kb on - strand, within BT0290at 338.057 kb on + strand, within BT0290at 338.104 kb on + strand, within BT0290at 338.183 kb on - strand, within BT0290at 338.183 kb on - strand, within BT0290at 338.240 kb on + strand, within BT0290at 338.261 kb on - strand, within BT0290at 338.310 kb on + strand, within BT0290at 338.312 kb on + strand, within BT0290at 338.312 kb on + strand, within BT0290at 338.313 kb on - strand, within BT0290at 338.328 kb on + strand, within BT0290at 338.359 kb on - strand, within BT0290at 338.427 kb on + strand, within BT0290at 338.562 kb on - strand, within BT0290at 338.564 kb on + strand, within BT0290at 338.565 kb on - strand, within BT0290at 338.644 kb on - strand, within BT0290at 338.723 kb on + strand, within BT0290at 338.723 kb on + strand, within BT0290at 338.723 kb on + strand, within BT0290at 338.725 kb on + strand, within BT0290at 338.725 kb on + strand, within BT0290at 338.768 kb on - strand, within BT0290at 338.869 kb on - strand, within BT0290at 338.875 kb on - strand, within BT0290at 338.938 kb on + strand, within BT0290at 338.939 kb on - strand, within BT0290at 338.939 kb on - strand, within BT0290at 338.939 kb on - strand, within BT0290at 338.983 kb on - strand, within BT0290at 339.021 kb on - strand, within BT0290at 339.067 kb on + strand, within BT0290at 339.135 kb on + strand, within BT0290at 339.395 kb on - strandat 339.395 kb on - strandat 339.472 kb on + strandat 339.477 kb on - strandat 339.510 kb on + strandat 339.589 kb on - strandat 339.737 kb on - strandat 339.745 kb on - strandat 339.745 kb on - strandat 339.749 kb on - strandat 339.755 kb on + strandat 339.846 kb on - strandat 339.889 kb on + strand, within BT0291at 339.890 kb on - strand, within BT0291at 339.909 kb on + strand, within BT0291at 339.970 kb on + strand, within BT0291at 339.986 kb on - strand, within BT0291at 339.991 kb on + strand, within BT0291at 339.991 kb on + strand, within BT0291at 340.070 kb on - strand, within BT0291at 340.201 kb on + strand, within BT0291at 340.303 kb on - strand, within BT0291at 340.373 kb on + strand, within BT0291at 340.377 kb on + strand, within BT0291at 340.514 kb on + strand, within BT0291

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Thioridazine 0.0125 mM
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336,242 - BT0289 0.76 -1.0
336,405 - BT0289 0.82 -0.8
336,475 + BT0289 0.84 -0.5
336,479 - BT0289 0.84 -1.0
336,480 + BT0289 0.84 -0.0
336,491 - BT0289 0.85 -1.6
336,570 - BT0289 0.88 -1.6
336,579 - BT0289 0.88 +1.2
336,620 - BT0289 0.90 -1.7
336,720 - -2.0
336,728 - -0.6
336,752 + -2.6
336,797 - +0.4
336,845 - -0.0
336,853 - -0.7
336,878 + -1.0
336,990 + +0.7
336,990 + +0.6
337,045 + -1.4
337,046 - +0.5
337,052 - +2.1
337,180 - +0.4
337,193 - -1.3
337,193 - -1.0
337,210 + -0.6
337,211 - -1.4
337,229 + -1.0
337,234 + -3.3
337,315 - -0.0
337,570 + BT0290 0.15 +1.0
337,570 + BT0290 0.15 -1.6
337,657 + BT0290 0.19 +3.1
337,763 - BT0290 0.23 -0.6
337,794 - BT0290 0.25 -0.3
337,815 - BT0290 0.26 -1.2
337,845 - BT0290 0.27 -0.0
338,057 + BT0290 0.36 +0.7
338,104 + BT0290 0.38 -2.0
338,183 - BT0290 0.41 -3.5
338,183 - BT0290 0.41 -1.0
338,240 + BT0290 0.44 -0.0
338,261 - BT0290 0.45 +0.7
338,310 + BT0290 0.47 +1.0
338,312 + BT0290 0.47 +3.0
338,312 + BT0290 0.47 -0.8
338,313 - BT0290 0.47 -1.0
338,328 + BT0290 0.48 -0.0
338,359 - BT0290 0.49 -0.4
338,427 + BT0290 0.52 -1.0
338,562 - BT0290 0.58 +0.6
338,564 + BT0290 0.58 +1.2
338,565 - BT0290 0.58 +0.4
338,644 - BT0290 0.61 -0.8
338,723 + BT0290 0.64 -0.7
338,723 + BT0290 0.64 +2.0
338,723 + BT0290 0.64 -1.3
338,725 + BT0290 0.64 -2.8
338,725 + BT0290 0.64 +1.0
338,768 - BT0290 0.66 -0.8
338,869 - BT0290 0.71 -1.6
338,875 - BT0290 0.71 -0.0
338,938 + BT0290 0.74 +1.0
338,939 - BT0290 0.74 -3.5
338,939 - BT0290 0.74 +2.3
338,939 - BT0290 0.74 -0.2
338,983 - BT0290 0.76 -1.6
339,021 - BT0290 0.77 -4.0
339,067 + BT0290 0.79 -0.0
339,135 + BT0290 0.82 +0.6
339,395 - -1.4
339,395 - -0.9
339,472 + -0.8
339,477 - +1.0
339,510 + +1.2
339,589 - +0.0
339,737 - +1.5
339,745 - +2.6
339,745 - -0.3
339,749 - -0.3
339,755 + -0.0
339,846 - -0.6
339,889 + BT0291 0.14 -2.2
339,890 - BT0291 0.14 +1.6
339,909 + BT0291 0.16 -1.0
339,970 + BT0291 0.22 +0.9
339,986 - BT0291 0.24 -2.6
339,991 + BT0291 0.24 -0.2
339,991 + BT0291 0.24 +0.2
340,070 - BT0291 0.32 -0.8
340,201 + BT0291 0.46 -0.6
340,303 - BT0291 0.56 -3.0
340,373 + BT0291 0.64 -2.0
340,377 + BT0291 0.64 +2.3
340,514 + BT0291 0.78 -3.3

Or see this region's nucleotide sequence