Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0348

Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0346 and DVU0347 are separated by 295 nucleotidesDVU0347 and DVU0348 are separated by 18 nucleotidesDVU0348 and DVU0349 are separated by 19 nucleotides DVU0346: DVU0346 - membrane protein, putative (TIGR), at 391,830 to 393,368 DVU0346 DVU0347: DVU0347 - transferase, hexapeptide repeat family (TIGR), at 393,664 to 394,335 DVU0347 DVU0348: DVU0348 - hypothetical protein (TIGR), at 394,354 to 396,078 DVU0348 DVU0349: DVU0349 - NeuB family protein (TIGR), at 396,098 to 397,156 DVU0349 Position (kb) 394 395 396 397Strain fitness (log2 ratio) -2 -1 0 1 2at 393.374 kb on + strandat 393.409 kb on - strandat 393.416 kb on + strandat 393.481 kb on + strandat 393.559 kb on - strandat 393.566 kb on + strandat 393.566 kb on + strandat 393.574 kb on - strandat 393.574 kb on - strandat 393.592 kb on + strandat 393.592 kb on + strandat 393.600 kb on - strandat 393.600 kb on - strandat 393.600 kb on - strandat 393.696 kb on - strandat 393.779 kb on - strand, within DVU0347at 393.789 kb on - strand, within DVU0347at 393.792 kb on - strand, within DVU0347at 393.809 kb on - strand, within DVU0347at 393.859 kb on + strand, within DVU0347at 393.867 kb on - strand, within DVU0347at 393.876 kb on - strand, within DVU0347at 394.039 kb on - strand, within DVU0347at 394.118 kb on - strand, within DVU0347at 394.209 kb on + strand, within DVU0347at 394.226 kb on - strand, within DVU0347at 394.281 kb on + strandat 394.309 kb on - strandat 394.319 kb on - strandat 394.384 kb on - strandat 394.385 kb on - strandat 394.459 kb on + strandat 394.468 kb on + strandat 394.476 kb on - strandat 394.555 kb on - strand, within DVU0348at 394.598 kb on + strand, within DVU0348at 394.636 kb on - strand, within DVU0348at 394.646 kb on - strand, within DVU0348at 394.646 kb on - strand, within DVU0348at 394.646 kb on - strand, within DVU0348at 394.684 kb on + strand, within DVU0348at 394.709 kb on + strand, within DVU0348at 394.722 kb on - strand, within DVU0348at 394.781 kb on - strand, within DVU0348at 394.789 kb on + strand, within DVU0348at 394.789 kb on + strand, within DVU0348at 394.797 kb on - strand, within DVU0348at 394.816 kb on + strand, within DVU0348at 394.819 kb on - strand, within DVU0348at 394.821 kb on + strand, within DVU0348at 394.823 kb on + strand, within DVU0348at 394.878 kb on + strand, within DVU0348at 394.882 kb on + strand, within DVU0348at 394.889 kb on + strand, within DVU0348at 394.904 kb on + strand, within DVU0348at 394.912 kb on - strand, within DVU0348at 394.991 kb on + strand, within DVU0348at 394.991 kb on + strand, within DVU0348at 395.024 kb on + strand, within DVU0348at 395.092 kb on - strand, within DVU0348at 395.185 kb on - strand, within DVU0348at 395.225 kb on + strand, within DVU0348at 395.286 kb on - strand, within DVU0348at 395.340 kb on - strand, within DVU0348at 395.381 kb on + strand, within DVU0348at 395.413 kb on - strand, within DVU0348at 395.481 kb on - strand, within DVU0348at 395.481 kb on - strand, within DVU0348at 395.573 kb on - strand, within DVU0348at 395.580 kb on + strand, within DVU0348at 395.587 kb on - strand, within DVU0348at 395.771 kb on + strand, within DVU0348at 395.842 kb on + strand, within DVU0348at 395.842 kb on + strand, within DVU0348at 395.985 kb on - strandat 396.047 kb on + strandat 396.055 kb on - strandat 396.169 kb on + strandat 396.188 kb on + strandat 396.287 kb on - strand, within DVU0349at 396.303 kb on - strand, within DVU0349at 396.313 kb on + strand, within DVU0349at 396.350 kb on + strand, within DVU0349at 396.378 kb on - strand, within DVU0349at 396.380 kb on + strand, within DVU0349at 396.389 kb on - strand, within DVU0349at 396.393 kb on + strand, within DVU0349at 396.428 kb on - strand, within DVU0349at 396.508 kb on + strand, within DVU0349at 396.559 kb on - strand, within DVU0349at 396.599 kb on - strand, within DVU0349at 396.624 kb on + strand, within DVU0349at 396.656 kb on - strand, within DVU0349at 396.673 kb on + strand, within DVU0349at 396.762 kb on + strand, within DVU0349at 396.815 kb on - strand, within DVU0349at 396.827 kb on - strand, within DVU0349at 396.846 kb on + strand, within DVU0349at 396.959 kb on + strand, within DVU0349at 396.961 kb on + strand, within DVU0349at 396.998 kb on - strand, within DVU0349at 397.070 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
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393,374 + +0.6
393,409 - -0.0
393,416 + -1.2
393,481 + -0.3
393,559 - +1.2
393,566 + +0.9
393,566 + -0.5
393,574 - +0.6
393,574 - +0.1
393,592 + -0.6
393,592 + -1.1
393,600 - +0.3
393,600 - -0.3
393,600 - +0.3
393,696 - +1.8
393,779 - DVU0347 0.17 -0.1
393,789 - DVU0347 0.19 +0.1
393,792 - DVU0347 0.19 -0.7
393,809 - DVU0347 0.22 -0.4
393,859 + DVU0347 0.29 -1.2
393,867 - DVU0347 0.30 -1.1
393,876 - DVU0347 0.32 -0.1
394,039 - DVU0347 0.56 -1.0
394,118 - DVU0347 0.68 -0.4
394,209 + DVU0347 0.81 +1.5
394,226 - DVU0347 0.84 -0.1
394,281 + -0.3
394,309 - +0.7
394,319 - -0.0
394,384 - +0.7
394,385 - +0.8
394,459 + -0.1
394,468 + +0.3
394,476 - +0.7
394,555 - DVU0348 0.12 +1.1
394,598 + DVU0348 0.14 +0.5
394,636 - DVU0348 0.16 -0.1
394,646 - DVU0348 0.17 +0.9
394,646 - DVU0348 0.17 -0.7
394,646 - DVU0348 0.17 +0.2
394,684 + DVU0348 0.19 -0.9
394,709 + DVU0348 0.21 +0.8
394,722 - DVU0348 0.21 +0.2
394,781 - DVU0348 0.25 +0.9
394,789 + DVU0348 0.25 +1.3
394,789 + DVU0348 0.25 +2.5
394,797 - DVU0348 0.26 +1.8
394,816 + DVU0348 0.27 +0.8
394,819 - DVU0348 0.27 +1.6
394,821 + DVU0348 0.27 +0.7
394,823 + DVU0348 0.27 +1.0
394,878 + DVU0348 0.30 +0.1
394,882 + DVU0348 0.31 -0.3
394,889 + DVU0348 0.31 +1.4
394,904 + DVU0348 0.32 +0.4
394,912 - DVU0348 0.32 +0.4
394,991 + DVU0348 0.37 +0.6
394,991 + DVU0348 0.37 +1.1
395,024 + DVU0348 0.39 +0.3
395,092 - DVU0348 0.43 +0.9
395,185 - DVU0348 0.48 +0.2
395,225 + DVU0348 0.50 -2.4
395,286 - DVU0348 0.54 +0.3
395,340 - DVU0348 0.57 +0.5
395,381 + DVU0348 0.60 -1.4
395,413 - DVU0348 0.61 +0.5
395,481 - DVU0348 0.65 +0.4
395,481 - DVU0348 0.65 -0.2
395,573 - DVU0348 0.71 +0.1
395,580 + DVU0348 0.71 -0.2
395,587 - DVU0348 0.71 +1.6
395,771 + DVU0348 0.82 +0.1
395,842 + DVU0348 0.86 +1.5
395,842 + DVU0348 0.86 -2.1
395,985 - +0.4
396,047 + +0.1
396,055 - -0.2
396,169 + +1.2
396,188 + +1.1
396,287 - DVU0349 0.18 +1.8
396,303 - DVU0349 0.19 +0.3
396,313 + DVU0349 0.20 +1.0
396,350 + DVU0349 0.24 +1.5
396,378 - DVU0349 0.26 +1.2
396,380 + DVU0349 0.27 +0.6
396,389 - DVU0349 0.27 +0.9
396,393 + DVU0349 0.28 +0.9
396,428 - DVU0349 0.31 +1.5
396,508 + DVU0349 0.39 +1.9
396,559 - DVU0349 0.44 +1.1
396,599 - DVU0349 0.47 +1.0
396,624 + DVU0349 0.50 +1.3
396,656 - DVU0349 0.53 +1.0
396,673 + DVU0349 0.54 +0.7
396,762 + DVU0349 0.63 +0.1
396,815 - DVU0349 0.68 +0.6
396,827 - DVU0349 0.69 +0.9
396,846 + DVU0349 0.71 +0.6
396,959 + DVU0349 0.81 +0.2
396,961 + DVU0349 0.81 +0.8
396,998 - DVU0349 0.85 -0.3
397,070 + -0.5

Or see this region's nucleotide sequence