Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3194

Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU3193 and engA are separated by 254 nucleotidesengA and DVU3195 are separated by 84 nucleotides DVU3193: DVU3193 - DNA-binding domain, excisionase family (TIGR), at 3,354,015 to 3,354,926 DVU3193 DVU3194: engA - GTP-binding protein EngA (TIGR), at 3,355,181 to 3,356,656 engA DVU3195: DVU3195 - lipoprotein, putative (TIGR), at 3,356,741 to 3,358,129 DVU3195 Position (kb) 3355 3356 3357Strain fitness (log2 ratio) -1 0 1at 3354.191 kb on - strand, within DVU3193at 3354.240 kb on - strand, within DVU3193at 3354.336 kb on - strand, within DVU3193at 3354.355 kb on + strand, within DVU3193at 3354.376 kb on - strand, within DVU3193at 3354.524 kb on - strand, within DVU3193at 3354.679 kb on + strand, within DVU3193at 3354.684 kb on + strand, within DVU3193at 3354.684 kb on + strand, within DVU3193at 3354.687 kb on - strand, within DVU3193at 3354.757 kb on - strand, within DVU3193at 3354.757 kb on - strand, within DVU3193at 3354.759 kb on + strand, within DVU3193at 3354.778 kb on + strand, within DVU3193at 3354.786 kb on - strand, within DVU3193at 3354.803 kb on - strand, within DVU3193at 3354.803 kb on - strand, within DVU3193at 3354.858 kb on + strandat 3354.942 kb on - strandat 3354.988 kb on + strandat 3354.990 kb on + strandat 3354.996 kb on - strandat 3354.998 kb on - strandat 3355.069 kb on + strandat 3355.112 kb on - strandat 3356.698 kb on - strandat 3356.717 kb on - strandat 3356.878 kb on - strandat 3356.956 kb on + strand, within DVU3195at 3356.984 kb on + strand, within DVU3195at 3357.006 kb on - strand, within DVU3195at 3357.051 kb on + strand, within DVU3195at 3357.096 kb on + strand, within DVU3195at 3357.156 kb on - strand, within DVU3195at 3357.184 kb on - strand, within DVU3195at 3357.255 kb on - strand, within DVU3195at 3357.265 kb on - strand, within DVU3195at 3357.426 kb on + strand, within DVU3195at 3357.476 kb on + strand, within DVU3195at 3357.571 kb on + strand, within DVU3195at 3357.573 kb on - strand, within DVU3195at 3357.598 kb on - strand, within DVU3195at 3357.620 kb on - strand, within DVU3195

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
remove
3,354,191 - DVU3193 0.19 +1.0
3,354,240 - DVU3193 0.25 +0.6
3,354,336 - DVU3193 0.35 +0.4
3,354,355 + DVU3193 0.37 +1.3
3,354,376 - DVU3193 0.40 -0.0
3,354,524 - DVU3193 0.56 +1.1
3,354,679 + DVU3193 0.73 +0.6
3,354,684 + DVU3193 0.73 +0.1
3,354,684 + DVU3193 0.73 +1.2
3,354,687 - DVU3193 0.74 +0.6
3,354,757 - DVU3193 0.81 +0.1
3,354,757 - DVU3193 0.81 +1.2
3,354,759 + DVU3193 0.82 +0.3
3,354,778 + DVU3193 0.84 +1.1
3,354,786 - DVU3193 0.85 -1.1
3,354,803 - DVU3193 0.86 +0.3
3,354,803 - DVU3193 0.86 -0.4
3,354,858 + +0.3
3,354,942 - -0.1
3,354,988 + -0.7
3,354,990 + -0.7
3,354,996 - +0.1
3,354,998 - +0.1
3,355,069 + -0.6
3,355,112 - -0.7
3,356,698 - -0.3
3,356,717 - +1.6
3,356,878 - -0.0
3,356,956 + DVU3195 0.15 +0.6
3,356,984 + DVU3195 0.17 -1.6
3,357,006 - DVU3195 0.19 -0.8
3,357,051 + DVU3195 0.22 +0.1
3,357,096 + DVU3195 0.26 -0.2
3,357,156 - DVU3195 0.30 +0.1
3,357,184 - DVU3195 0.32 -0.1
3,357,255 - DVU3195 0.37 -0.2
3,357,265 - DVU3195 0.38 -1.6
3,357,426 + DVU3195 0.49 -1.1
3,357,476 + DVU3195 0.53 -1.4
3,357,571 + DVU3195 0.60 +0.3
3,357,573 - DVU3195 0.60 -1.3
3,357,598 - DVU3195 0.62 -0.2
3,357,620 - DVU3195 0.63 -1.1

Or see this region's nucleotide sequence