Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3178

Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU3176 and DVU3177 are separated by 94 nucleotidesDVU3177 and DVU3178 overlap by 4 nucleotidesDVU3178 and ispB are separated by 20 nucleotides DVU3176: DVU3176 - UDP-glucose/GDP-mannose dehydrogenase family protein (TIGR), at 3,332,256 to 3,333,578 DVU3176 DVU3177: DVU3177 - hypothetical protein (TIGR), at 3,333,673 to 3,333,822 DVU3177 DVU3178: DVU3178 - conserved hypothetical protein (TIGR), at 3,333,819 to 3,334,529 DVU3178 DVU3179: ispB - octaprenyl-diphosphate synthase (TIGR), at 3,334,550 to 3,335,515 ispB Position (kb) 3333 3334 3335Strain fitness (log2 ratio) -1 0 1at 3333.601 kb on + strandat 3333.608 kb on + strandat 3333.610 kb on + strandat 3333.640 kb on + strandat 3333.675 kb on - strandat 3333.709 kb on + strand, within DVU3177at 3333.803 kb on + strand, within DVU3177at 3335.522 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
remove
3,333,601 + +0.1
3,333,608 + -0.8
3,333,610 + +0.0
3,333,640 + +0.5
3,333,675 - -0.8
3,333,709 + DVU3177 0.24 +0.5
3,333,803 + DVU3177 0.87 +1.3
3,335,522 + -0.9

Or see this region's nucleotide sequence