Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2472

Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2471 and DVU2472 are separated by 305 nucleotidesDVU2472 and DVU2473 are separated by 145 nucleotidesDVU2473 and DVU2474 are separated by 7 nucleotides DVU2471: DVU2471 - oxidoreductase, selenocysteine-containing (TIGR), at 2,578,425 to 2,579,723 DVU2471 DVU2472: DVU2472 - conserved hypothetical protein (TIGR), at 2,580,029 to 2,582,368 DVU2472 DVU2473: DVU2473 - hypothetical protein (TIGR), at 2,582,514 to 2,582,657 DVU2473 DVU2474: DVU2474 - hypothetical protein (TIGR), at 2,582,665 to 2,583,147 DVU2474 Position (kb) 2580 2581 2582 2583Strain fitness (log2 ratio) -2 -1 0 1 2at 2579.113 kb on - strand, within DVU2471at 2579.115 kb on + strand, within DVU2471at 2579.123 kb on - strand, within DVU2471at 2579.254 kb on - strand, within DVU2471at 2579.324 kb on - strand, within DVU2471at 2579.391 kb on + strand, within DVU2471at 2579.420 kb on + strand, within DVU2471at 2579.423 kb on - strand, within DVU2471at 2579.462 kb on + strand, within DVU2471at 2579.519 kb on - strand, within DVU2471at 2579.633 kb on + strandat 2579.690 kb on - strandat 2579.703 kb on - strandat 2579.703 kb on - strandat 2579.718 kb on + strandat 2579.726 kb on - strandat 2579.792 kb on - strandat 2579.833 kb on + strandat 2579.863 kb on + strandat 2579.944 kb on - strandat 2579.946 kb on + strandat 2579.962 kb on + strandat 2580.035 kb on - strandat 2580.058 kb on + strandat 2580.114 kb on + strandat 2580.119 kb on + strandat 2580.159 kb on + strandat 2580.223 kb on - strandat 2580.233 kb on - strandat 2580.238 kb on - strandat 2580.273 kb on - strand, within DVU2472at 2580.307 kb on + strand, within DVU2472at 2580.307 kb on + strand, within DVU2472at 2580.308 kb on + strand, within DVU2472at 2580.406 kb on - strand, within DVU2472at 2580.438 kb on + strand, within DVU2472at 2580.439 kb on + strand, within DVU2472at 2580.463 kb on + strand, within DVU2472at 2580.479 kb on - strand, within DVU2472at 2580.515 kb on - strand, within DVU2472at 2580.529 kb on + strand, within DVU2472at 2580.570 kb on - strand, within DVU2472at 2580.687 kb on - strand, within DVU2472at 2580.687 kb on - strand, within DVU2472at 2580.712 kb on + strand, within DVU2472at 2580.763 kb on - strand, within DVU2472at 2580.885 kb on - strand, within DVU2472at 2580.947 kb on - strand, within DVU2472at 2581.140 kb on + strand, within DVU2472at 2581.160 kb on - strand, within DVU2472at 2581.219 kb on + strand, within DVU2472at 2581.263 kb on + strand, within DVU2472at 2581.263 kb on - strand, within DVU2472at 2581.300 kb on + strand, within DVU2472at 2581.440 kb on + strand, within DVU2472at 2581.441 kb on - strand, within DVU2472at 2581.455 kb on + strand, within DVU2472at 2581.563 kb on + strand, within DVU2472at 2581.598 kb on + strand, within DVU2472at 2581.612 kb on + strand, within DVU2472at 2581.686 kb on - strand, within DVU2472at 2581.714 kb on - strand, within DVU2472at 2581.783 kb on + strand, within DVU2472at 2581.784 kb on - strand, within DVU2472at 2581.902 kb on + strand, within DVU2472at 2581.935 kb on - strand, within DVU2472at 2581.935 kb on - strand, within DVU2472at 2581.955 kb on + strand, within DVU2472at 2581.982 kb on + strand, within DVU2472at 2581.993 kb on + strand, within DVU2472at 2582.061 kb on + strand, within DVU2472at 2582.084 kb on + strand, within DVU2472at 2582.117 kb on + strand, within DVU2472at 2582.170 kb on - strandat 2582.190 kb on + strandat 2582.284 kb on - strandat 2582.293 kb on + strandat 2582.301 kb on - strandat 2582.330 kb on - strandat 2582.427 kb on - strandat 2582.480 kb on + strandat 2582.488 kb on - strandat 2582.493 kb on - strandat 2582.545 kb on + strand, within DVU2473at 2582.624 kb on - strand, within DVU2473at 2582.702 kb on - strandat 2582.847 kb on - strand, within DVU2474at 2582.902 kb on - strand, within DVU2474at 2583.080 kb on - strand, within DVU2474at 2583.149 kb on + strandat 2583.159 kb on - strandat 2583.193 kb on - strandat 2583.252 kb on - strandat 2583.358 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
remove
2,579,113 - DVU2471 0.53 +2.2
2,579,115 + DVU2471 0.53 -0.8
2,579,123 - DVU2471 0.54 +0.1
2,579,254 - DVU2471 0.64 -1.8
2,579,324 - DVU2471 0.69 +1.2
2,579,391 + DVU2471 0.74 +0.1
2,579,420 + DVU2471 0.77 -0.4
2,579,423 - DVU2471 0.77 -1.0
2,579,462 + DVU2471 0.80 +0.4
2,579,519 - DVU2471 0.84 -0.9
2,579,633 + +0.6
2,579,690 - +1.8
2,579,703 - +0.7
2,579,703 - +0.1
2,579,718 + +1.2
2,579,726 - -0.5
2,579,792 - +1.3
2,579,833 + +0.0
2,579,863 + -0.8
2,579,944 - -0.4
2,579,946 + +0.4
2,579,962 + -0.6
2,580,035 - -1.0
2,580,058 + -0.8
2,580,114 + -0.6
2,580,119 + -0.1
2,580,159 + -0.7
2,580,223 - -0.1
2,580,233 - -2.3
2,580,238 - -1.2
2,580,273 - DVU2472 0.10 -1.0
2,580,307 + DVU2472 0.12 -0.7
2,580,307 + DVU2472 0.12 -0.9
2,580,308 + DVU2472 0.12 -0.0
2,580,406 - DVU2472 0.16 -1.3
2,580,438 + DVU2472 0.17 +0.7
2,580,439 + DVU2472 0.18 -1.4
2,580,463 + DVU2472 0.19 -0.5
2,580,479 - DVU2472 0.19 -0.6
2,580,515 - DVU2472 0.21 -0.6
2,580,529 + DVU2472 0.21 -1.3
2,580,570 - DVU2472 0.23 +0.3
2,580,687 - DVU2472 0.28 -1.1
2,580,687 - DVU2472 0.28 +0.0
2,580,712 + DVU2472 0.29 -1.0
2,580,763 - DVU2472 0.31 -1.5
2,580,885 - DVU2472 0.37 -0.6
2,580,947 - DVU2472 0.39 -1.1
2,581,140 + DVU2472 0.47 -1.0
2,581,160 - DVU2472 0.48 -0.2
2,581,219 + DVU2472 0.51 +0.3
2,581,263 + DVU2472 0.53 -1.5
2,581,263 - DVU2472 0.53 -1.0
2,581,300 + DVU2472 0.54 -1.4
2,581,440 + DVU2472 0.60 -1.3
2,581,441 - DVU2472 0.60 +0.7
2,581,455 + DVU2472 0.61 -0.8
2,581,563 + DVU2472 0.66 -1.6
2,581,598 + DVU2472 0.67 -1.1
2,581,612 + DVU2472 0.68 -0.5
2,581,686 - DVU2472 0.71 -0.4
2,581,714 - DVU2472 0.72 -0.6
2,581,783 + DVU2472 0.75 -1.4
2,581,784 - DVU2472 0.75 -0.2
2,581,902 + DVU2472 0.80 -0.9
2,581,935 - DVU2472 0.81 -0.5
2,581,935 - DVU2472 0.81 -0.8
2,581,955 + DVU2472 0.82 -1.3
2,581,982 + DVU2472 0.83 -0.4
2,581,993 + DVU2472 0.84 -0.9
2,582,061 + DVU2472 0.87 +0.7
2,582,084 + DVU2472 0.88 -0.2
2,582,117 + DVU2472 0.89 +0.0
2,582,170 - -0.9
2,582,190 + +1.0
2,582,284 - +2.2
2,582,293 + -1.4
2,582,301 - -1.7
2,582,330 - +0.1
2,582,427 - -0.4
2,582,480 + -0.1
2,582,488 - -0.1
2,582,493 - -0.8
2,582,545 + DVU2473 0.22 -0.8
2,582,624 - DVU2473 0.76 -0.6
2,582,702 - +0.7
2,582,847 - DVU2474 0.38 -1.4
2,582,902 - DVU2474 0.49 -0.3
2,583,080 - DVU2474 0.86 -0.5
2,583,149 + +0.7
2,583,159 - +1.0
2,583,193 - -1.8
2,583,252 - +2.1
2,583,358 - -0.4

Or see this region's nucleotide sequence