Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2471 and DVU2472 are separated by 305 nucleotides DVU2472 and DVU2473 are separated by 145 nucleotides DVU2473 and DVU2474 are separated by 7 nucleotides
DVU2471: DVU2471 - oxidoreductase, selenocysteine-containing (TIGR), at 2,578,425 to 2,579,723
DVU2471
DVU2472: DVU2472 - conserved hypothetical protein (TIGR), at 2,580,029 to 2,582,368
DVU2472
DVU2473: DVU2473 - hypothetical protein (TIGR), at 2,582,514 to 2,582,657
DVU2473
DVU2474: DVU2474 - hypothetical protein (TIGR), at 2,582,665 to 2,583,147
DVU2474
Position (kb)
2580
2581
2582
2583 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2579.113 kb on - strand, within DVU2471 at 2579.115 kb on + strand, within DVU2471 at 2579.123 kb on - strand, within DVU2471 at 2579.254 kb on - strand, within DVU2471 at 2579.324 kb on - strand, within DVU2471 at 2579.391 kb on + strand, within DVU2471 at 2579.420 kb on + strand, within DVU2471 at 2579.423 kb on - strand, within DVU2471 at 2579.462 kb on + strand, within DVU2471 at 2579.519 kb on - strand, within DVU2471 at 2579.633 kb on + strand at 2579.690 kb on - strand at 2579.703 kb on - strand at 2579.703 kb on - strand at 2579.718 kb on + strand at 2579.726 kb on - strand at 2579.792 kb on - strand at 2579.833 kb on + strand at 2579.863 kb on + strand at 2579.944 kb on - strand at 2579.946 kb on + strand at 2579.962 kb on + strand at 2580.035 kb on - strand at 2580.058 kb on + strand at 2580.114 kb on + strand at 2580.119 kb on + strand at 2580.159 kb on + strand at 2580.223 kb on - strand at 2580.233 kb on - strand at 2580.238 kb on - strand at 2580.273 kb on - strand, within DVU2472 at 2580.307 kb on + strand, within DVU2472 at 2580.307 kb on + strand, within DVU2472 at 2580.308 kb on + strand, within DVU2472 at 2580.406 kb on - strand, within DVU2472 at 2580.438 kb on + strand, within DVU2472 at 2580.439 kb on + strand, within DVU2472 at 2580.463 kb on + strand, within DVU2472 at 2580.479 kb on - strand, within DVU2472 at 2580.515 kb on - strand, within DVU2472 at 2580.529 kb on + strand, within DVU2472 at 2580.570 kb on - strand, within DVU2472 at 2580.687 kb on - strand, within DVU2472 at 2580.687 kb on - strand, within DVU2472 at 2580.712 kb on + strand, within DVU2472 at 2580.763 kb on - strand, within DVU2472 at 2580.885 kb on - strand, within DVU2472 at 2580.947 kb on - strand, within DVU2472 at 2581.140 kb on + strand, within DVU2472 at 2581.160 kb on - strand, within DVU2472 at 2581.219 kb on + strand, within DVU2472 at 2581.263 kb on + strand, within DVU2472 at 2581.263 kb on - strand, within DVU2472 at 2581.300 kb on + strand, within DVU2472 at 2581.440 kb on + strand, within DVU2472 at 2581.441 kb on - strand, within DVU2472 at 2581.455 kb on + strand, within DVU2472 at 2581.563 kb on + strand, within DVU2472 at 2581.598 kb on + strand, within DVU2472 at 2581.612 kb on + strand, within DVU2472 at 2581.686 kb on - strand, within DVU2472 at 2581.714 kb on - strand, within DVU2472 at 2581.783 kb on + strand, within DVU2472 at 2581.784 kb on - strand, within DVU2472 at 2581.902 kb on + strand, within DVU2472 at 2581.935 kb on - strand, within DVU2472 at 2581.935 kb on - strand, within DVU2472 at 2581.955 kb on + strand, within DVU2472 at 2581.982 kb on + strand, within DVU2472 at 2581.993 kb on + strand, within DVU2472 at 2582.061 kb on + strand, within DVU2472 at 2582.084 kb on + strand, within DVU2472 at 2582.117 kb on + strand, within DVU2472 at 2582.170 kb on - strand at 2582.190 kb on + strand at 2582.284 kb on - strand at 2582.293 kb on + strand at 2582.301 kb on - strand at 2582.330 kb on - strand at 2582.427 kb on - strand at 2582.480 kb on + strand at 2582.488 kb on - strand at 2582.493 kb on - strand at 2582.545 kb on + strand, within DVU2473 at 2582.624 kb on - strand, within DVU2473 at 2582.702 kb on - strand at 2582.847 kb on - strand, within DVU2474 at 2582.902 kb on - strand, within DVU2474 at 2583.080 kb on - strand, within DVU2474 at 2583.149 kb on + strand at 2583.159 kb on - strand at 2583.193 kb on - strand at 2583.252 kb on - strand at 2583.358 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM remove 2,579,113 - DVU2471 0.53 +2.2 2,579,115 + DVU2471 0.53 -0.8 2,579,123 - DVU2471 0.54 +0.1 2,579,254 - DVU2471 0.64 -1.8 2,579,324 - DVU2471 0.69 +1.2 2,579,391 + DVU2471 0.74 +0.1 2,579,420 + DVU2471 0.77 -0.4 2,579,423 - DVU2471 0.77 -1.0 2,579,462 + DVU2471 0.80 +0.4 2,579,519 - DVU2471 0.84 -0.9 2,579,633 + +0.6 2,579,690 - +1.8 2,579,703 - +0.7 2,579,703 - +0.1 2,579,718 + +1.2 2,579,726 - -0.5 2,579,792 - +1.3 2,579,833 + +0.0 2,579,863 + -0.8 2,579,944 - -0.4 2,579,946 + +0.4 2,579,962 + -0.6 2,580,035 - -1.0 2,580,058 + -0.8 2,580,114 + -0.6 2,580,119 + -0.1 2,580,159 + -0.7 2,580,223 - -0.1 2,580,233 - -2.3 2,580,238 - -1.2 2,580,273 - DVU2472 0.10 -1.0 2,580,307 + DVU2472 0.12 -0.7 2,580,307 + DVU2472 0.12 -0.9 2,580,308 + DVU2472 0.12 -0.0 2,580,406 - DVU2472 0.16 -1.3 2,580,438 + DVU2472 0.17 +0.7 2,580,439 + DVU2472 0.18 -1.4 2,580,463 + DVU2472 0.19 -0.5 2,580,479 - DVU2472 0.19 -0.6 2,580,515 - DVU2472 0.21 -0.6 2,580,529 + DVU2472 0.21 -1.3 2,580,570 - DVU2472 0.23 +0.3 2,580,687 - DVU2472 0.28 -1.1 2,580,687 - DVU2472 0.28 +0.0 2,580,712 + DVU2472 0.29 -1.0 2,580,763 - DVU2472 0.31 -1.5 2,580,885 - DVU2472 0.37 -0.6 2,580,947 - DVU2472 0.39 -1.1 2,581,140 + DVU2472 0.47 -1.0 2,581,160 - DVU2472 0.48 -0.2 2,581,219 + DVU2472 0.51 +0.3 2,581,263 + DVU2472 0.53 -1.5 2,581,263 - DVU2472 0.53 -1.0 2,581,300 + DVU2472 0.54 -1.4 2,581,440 + DVU2472 0.60 -1.3 2,581,441 - DVU2472 0.60 +0.7 2,581,455 + DVU2472 0.61 -0.8 2,581,563 + DVU2472 0.66 -1.6 2,581,598 + DVU2472 0.67 -1.1 2,581,612 + DVU2472 0.68 -0.5 2,581,686 - DVU2472 0.71 -0.4 2,581,714 - DVU2472 0.72 -0.6 2,581,783 + DVU2472 0.75 -1.4 2,581,784 - DVU2472 0.75 -0.2 2,581,902 + DVU2472 0.80 -0.9 2,581,935 - DVU2472 0.81 -0.5 2,581,935 - DVU2472 0.81 -0.8 2,581,955 + DVU2472 0.82 -1.3 2,581,982 + DVU2472 0.83 -0.4 2,581,993 + DVU2472 0.84 -0.9 2,582,061 + DVU2472 0.87 +0.7 2,582,084 + DVU2472 0.88 -0.2 2,582,117 + DVU2472 0.89 +0.0 2,582,170 - -0.9 2,582,190 + +1.0 2,582,284 - +2.2 2,582,293 + -1.4 2,582,301 - -1.7 2,582,330 - +0.1 2,582,427 - -0.4 2,582,480 + -0.1 2,582,488 - -0.1 2,582,493 - -0.8 2,582,545 + DVU2473 0.22 -0.8 2,582,624 - DVU2473 0.76 -0.6 2,582,702 - +0.7 2,582,847 - DVU2474 0.38 -1.4 2,582,902 - DVU2474 0.49 -0.3 2,583,080 - DVU2474 0.86 -0.5 2,583,149 + +0.7 2,583,159 - +1.0 2,583,193 - -1.8 2,583,252 - +2.1 2,583,358 - -0.4
Or see this region's nucleotide sequence