Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1168

Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1166 and DVU1168 are separated by 797 nucleotidesDVU1168 and DVU1169 are separated by 97 nucleotides DVU1166: DVU1166 - hypothetical protein (TIGR), at 1,259,571 to 1,259,723 DVU1166 DVU1168: DVU1168 - hypothetical protein (TIGR), at 1,260,521 to 1,260,937 DVU1168 DVU1169: DVU1169 - methyl-accepting chemotaxis protein (TIGR), at 1,261,035 to 1,263,449 DVU1169 Position (kb) 1260 1261Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1260.358 kb on + strandat 1260.411 kb on - strandat 1260.411 kb on - strandat 1260.421 kb on - strandat 1260.553 kb on + strandat 1260.613 kb on - strand, within DVU1168at 1260.626 kb on + strand, within DVU1168at 1260.660 kb on + strand, within DVU1168at 1260.662 kb on + strand, within DVU1168at 1260.663 kb on - strand, within DVU1168at 1260.670 kb on - strand, within DVU1168at 1260.834 kb on + strand, within DVU1168at 1260.852 kb on - strand, within DVU1168at 1260.852 kb on - strand, within DVU1168at 1260.873 kb on + strand, within DVU1168at 1260.884 kb on - strand, within DVU1168at 1260.917 kb on - strandat 1260.996 kb on - strandat 1261.098 kb on - strandat 1261.191 kb on + strandat 1261.284 kb on - strand, within DVU1169at 1261.326 kb on + strand, within DVU1169at 1261.348 kb on + strand, within DVU1169at 1261.353 kb on + strand, within DVU1169at 1261.552 kb on + strand, within DVU1169at 1261.560 kb on - strand, within DVU1169at 1261.602 kb on - strand, within DVU1169at 1261.694 kb on - strand, within DVU1169at 1261.773 kb on - strand, within DVU1169at 1261.797 kb on - strand, within DVU1169at 1261.817 kb on + strand, within DVU1169at 1261.827 kb on + strand, within DVU1169

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
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1,260,358 + -0.2
1,260,411 - -0.1
1,260,411 - -0.6
1,260,421 - -0.1
1,260,553 + -4.8
1,260,613 - DVU1168 0.22 -0.2
1,260,626 + DVU1168 0.25 +1.6
1,260,660 + DVU1168 0.33 -0.3
1,260,662 + DVU1168 0.34 -0.1
1,260,663 - DVU1168 0.34 +2.1
1,260,670 - DVU1168 0.36 -0.7
1,260,834 + DVU1168 0.75 -0.2
1,260,852 - DVU1168 0.79 +1.7
1,260,852 - DVU1168 0.79 +1.9
1,260,873 + DVU1168 0.84 -0.1
1,260,884 - DVU1168 0.87 -0.3
1,260,917 - -0.6
1,260,996 - -1.2
1,261,098 - -0.9
1,261,191 + -0.2
1,261,284 - DVU1169 0.10 -0.3
1,261,326 + DVU1169 0.12 -0.4
1,261,348 + DVU1169 0.13 -0.5
1,261,353 + DVU1169 0.13 +1.5
1,261,552 + DVU1169 0.21 +0.0
1,261,560 - DVU1169 0.22 -0.6
1,261,602 - DVU1169 0.23 -0.3
1,261,694 - DVU1169 0.27 -0.6
1,261,773 - DVU1169 0.31 -0.3
1,261,797 - DVU1169 0.32 -0.1
1,261,817 + DVU1169 0.32 -0.5
1,261,827 + DVU1169 0.33 -0.5

Or see this region's nucleotide sequence