Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0909

Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU0908 and DVU0909 are separated by 165 nucleotidesDVU0909 and fliM are separated by 135 nucleotides DVU0908: DVU0908 - ATP-dependent reduction of co(II)balamin (from data), at 1,001,899 to 1,003,530 DVU0908 DVU0909: DVU0909 - hypothetical protein (TIGR), at 1,003,696 to 1,004,091 DVU0909 DVU0910: fliM - flagellar motor switch protein FliM (TIGR), at 1,004,227 to 1,005,207 fliM Position (kb) 1003 1004 1005Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1002.701 kb on + strand, within DVU0908at 1002.709 kb on - strand, within DVU0908at 1002.709 kb on - strand, within DVU0908at 1002.720 kb on + strand, within DVU0908at 1002.762 kb on - strand, within DVU0908at 1002.807 kb on - strand, within DVU0908at 1002.955 kb on - strand, within DVU0908at 1003.129 kb on + strand, within DVU0908at 1003.152 kb on + strand, within DVU0908at 1003.190 kb on - strand, within DVU0908at 1003.258 kb on + strand, within DVU0908at 1003.324 kb on + strand, within DVU0908at 1003.350 kb on + strand, within DVU0908at 1003.350 kb on + strand, within DVU0908at 1003.429 kb on + strandat 1003.552 kb on + strandat 1003.640 kb on - strandat 1003.786 kb on + strand, within DVU0909at 1003.786 kb on + strand, within DVU0909at 1003.791 kb on + strand, within DVU0909at 1003.794 kb on - strand, within DVU0909at 1003.940 kb on - strand, within DVU0909at 1004.050 kb on - strand, within DVU0909at 1004.109 kb on + strandat 1004.117 kb on + strandat 1004.177 kb on - strandat 1004.335 kb on + strand, within fliMat 1004.452 kb on + strand, within fliMat 1004.645 kb on - strand, within fliMat 1004.679 kb on - strand, within fliMat 1004.679 kb on - strand, within fliMat 1004.688 kb on - strand, within fliMat 1004.690 kb on + strand, within fliMat 1004.768 kb on - strand, within fliMat 1004.903 kb on + strand, within fliMat 1004.945 kb on - strand, within fliMat 1004.979 kb on + strand, within fliMat 1005.058 kb on - strand, within fliMat 1005.065 kb on - strand, within fliMat 1005.083 kb on - strand, within fliM

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
remove
1,002,701 + DVU0908 0.49 -1.2
1,002,709 - DVU0908 0.50 -4.1
1,002,709 - DVU0908 0.50 -1.9
1,002,720 + DVU0908 0.50 -4.7
1,002,762 - DVU0908 0.53 -3.4
1,002,807 - DVU0908 0.56 -3.6
1,002,955 - DVU0908 0.65 -2.0
1,003,129 + DVU0908 0.75 -3.5
1,003,152 + DVU0908 0.77 +0.7
1,003,190 - DVU0908 0.79 -6.1
1,003,258 + DVU0908 0.83 -4.8
1,003,324 + DVU0908 0.87 -3.2
1,003,350 + DVU0908 0.89 -2.5
1,003,350 + DVU0908 0.89 +0.7
1,003,429 + -2.1
1,003,552 + -1.1
1,003,640 - +0.9
1,003,786 + DVU0909 0.23 +1.3
1,003,786 + DVU0909 0.23 +1.3
1,003,791 + DVU0909 0.24 +1.1
1,003,794 - DVU0909 0.25 +0.2
1,003,940 - DVU0909 0.62 +1.1
1,004,050 - DVU0909 0.89 +0.6
1,004,109 + -1.6
1,004,117 + +1.2
1,004,177 - -1.2
1,004,335 + fliM DVU0910 0.11 -0.5
1,004,452 + fliM DVU0910 0.23 +0.2
1,004,645 - fliM DVU0910 0.43 -1.2
1,004,679 - fliM DVU0910 0.46 -0.7
1,004,679 - fliM DVU0910 0.46 -1.2
1,004,688 - fliM DVU0910 0.47 -1.1
1,004,690 + fliM DVU0910 0.47 -0.9
1,004,768 - fliM DVU0910 0.55 -0.2
1,004,903 + fliM DVU0910 0.69 -0.5
1,004,945 - fliM DVU0910 0.73 -0.3
1,004,979 + fliM DVU0910 0.77 -0.8
1,005,058 - fliM DVU0910 0.85 +1.0
1,005,065 - fliM DVU0910 0.85 -0.2
1,005,083 - fliM DVU0910 0.87 +0.1

Or see this region's nucleotide sequence