Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt recD and DVU0896 are separated by 9 nucleotides DVU0896 and DVU0897 are separated by 1 nucleotides
DVU0895: recD - helicase, RecD/TraA family (TIGR), at 986,193 to 988,421
recD
DVU0896: DVU0896 - lipoprotein, NLP/P60 family (TIGR), at 988,431 to 989,825
DVU0896
DVU0897: DVU0897 - RNA modification enzyme, MiaB-family (TIGR), at 989,827 to 991,203
DVU0897
Position (kb) 988
989
990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 987.433 kb on + strand, within recD at 987.479 kb on - strand, within recD at 987.504 kb on + strand, within recD at 987.512 kb on + strand, within recD at 987.567 kb on - strand, within recD at 987.572 kb on + strand, within recD at 987.618 kb on + strand, within recD at 987.871 kb on - strand, within recD at 987.945 kb on - strand, within recD at 987.948 kb on + strand, within recD at 988.052 kb on - strand, within recD at 988.121 kb on - strand, within recD at 988.177 kb on - strand, within recD at 988.194 kb on + strand, within recD at 988.195 kb on + strand, within recD at 988.203 kb on - strand at 988.203 kb on - strand at 988.243 kb on - strand at 988.291 kb on - strand at 988.348 kb on - strand at 988.381 kb on + strand at 988.381 kb on + strand at 988.381 kb on + strand at 988.430 kb on + strand at 988.523 kb on + strand at 988.559 kb on - strand at 988.560 kb on + strand at 988.601 kb on - strand, within DVU0896 at 988.654 kb on - strand, within DVU0896 at 988.659 kb on - strand, within DVU0896 at 988.659 kb on - strand, within DVU0896 at 988.664 kb on - strand, within DVU0896 at 988.764 kb on - strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.847 kb on + strand, within DVU0896 at 988.848 kb on - strand, within DVU0896 at 988.855 kb on - strand, within DVU0896 at 988.855 kb on - strand, within DVU0896 at 988.932 kb on + strand, within DVU0896 at 988.932 kb on + strand, within DVU0896 at 988.952 kb on + strand, within DVU0896 at 988.953 kb on + strand, within DVU0896 at 988.959 kb on + strand, within DVU0896 at 988.960 kb on - strand, within DVU0896 at 988.961 kb on - strand, within DVU0896 at 989.021 kb on - strand, within DVU0896 at 989.032 kb on + strand, within DVU0896 at 989.040 kb on - strand, within DVU0896 at 989.142 kb on - strand, within DVU0896 at 989.153 kb on + strand, within DVU0896 at 989.173 kb on - strand, within DVU0896 at 989.212 kb on - strand, within DVU0896 at 989.253 kb on + strand, within DVU0896 at 989.256 kb on - strand, within DVU0896 at 989.261 kb on - strand, within DVU0896 at 989.274 kb on + strand, within DVU0896 at 989.295 kb on - strand, within DVU0896 at 989.390 kb on + strand, within DVU0896 at 989.390 kb on + strand, within DVU0896 at 989.431 kb on + strand, within DVU0896 at 989.431 kb on + strand, within DVU0896 at 989.439 kb on - strand, within DVU0896 at 989.495 kb on + strand, within DVU0896 at 989.495 kb on + strand, within DVU0896 at 989.495 kb on + strand, within DVU0896 at 989.503 kb on - strand, within DVU0896 at 989.617 kb on + strand, within DVU0896 at 989.633 kb on - strand, within DVU0896 at 989.725 kb on + strand at 989.743 kb on - strand at 989.785 kb on - strand at 989.785 kb on - strand at 989.991 kb on - strand, within DVU0897 at 990.103 kb on + strand, within DVU0897 at 990.146 kb on - strand, within DVU0897 at 990.157 kb on + strand, within DVU0897 at 990.247 kb on - strand, within DVU0897 at 990.270 kb on + strand, within DVU0897 at 990.339 kb on - strand, within DVU0897 at 990.398 kb on + strand, within DVU0897 at 990.564 kb on - strand, within DVU0897 at 990.626 kb on + strand, within DVU0897 at 990.634 kb on - strand, within DVU0897 at 990.692 kb on + strand, within DVU0897 at 990.729 kb on - strand, within DVU0897
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM remove 987,433 + recD DVU0895 0.56 -1.8 987,479 - recD DVU0895 0.58 +2.7 987,504 + recD DVU0895 0.59 +0.1 987,512 + recD DVU0895 0.59 +1.1 987,567 - recD DVU0895 0.62 -0.0 987,572 + recD DVU0895 0.62 -0.8 987,618 + recD DVU0895 0.64 -0.9 987,871 - recD DVU0895 0.75 +0.1 987,945 - recD DVU0895 0.79 +0.1 987,948 + recD DVU0895 0.79 -0.2 988,052 - recD DVU0895 0.83 +0.7 988,121 - recD DVU0895 0.86 -0.3 988,177 - recD DVU0895 0.89 -0.4 988,194 + recD DVU0895 0.90 +0.9 988,195 + recD DVU0895 0.90 -0.1 988,203 - +0.4 988,203 - +2.7 988,243 - -2.8 988,291 - -0.8 988,348 - +0.3 988,381 + +1.3 988,381 + -0.7 988,381 + -0.1 988,430 + +0.3 988,523 + -0.5 988,559 - -0.6 988,560 + +0.2 988,601 - DVU0896 0.12 +0.1 988,654 - DVU0896 0.16 +0.1 988,659 - DVU0896 0.16 +0.1 988,659 - DVU0896 0.16 +0.4 988,664 - DVU0896 0.17 +0.2 988,764 - DVU0896 0.24 -0.3 988,847 + DVU0896 0.30 -0.3 988,847 + DVU0896 0.30 +0.5 988,847 + DVU0896 0.30 +0.0 988,848 - DVU0896 0.30 +2.2 988,855 - DVU0896 0.30 +0.0 988,855 - DVU0896 0.30 -0.1 988,932 + DVU0896 0.36 +0.3 988,932 + DVU0896 0.36 +0.2 988,952 + DVU0896 0.37 +0.0 988,953 + DVU0896 0.37 +0.0 988,959 + DVU0896 0.38 -0.2 988,960 - DVU0896 0.38 -0.6 988,961 - DVU0896 0.38 +1.3 989,021 - DVU0896 0.42 -0.8 989,032 + DVU0896 0.43 +0.1 989,040 - DVU0896 0.44 +0.1 989,142 - DVU0896 0.51 -0.7 989,153 + DVU0896 0.52 +0.1 989,173 - DVU0896 0.53 -0.2 989,212 - DVU0896 0.56 -0.5 989,253 + DVU0896 0.59 -0.0 989,256 - DVU0896 0.59 +0.1 989,261 - DVU0896 0.59 -0.5 989,274 + DVU0896 0.60 -0.6 989,295 - DVU0896 0.62 -0.6 989,390 + DVU0896 0.69 +0.6 989,390 + DVU0896 0.69 +0.4 989,431 + DVU0896 0.72 +2.1 989,431 + DVU0896 0.72 +0.2 989,439 - DVU0896 0.72 -0.7 989,495 + DVU0896 0.76 +0.9 989,495 + DVU0896 0.76 -0.1 989,495 + DVU0896 0.76 -0.2 989,503 - DVU0896 0.77 +2.4 989,617 + DVU0896 0.85 +0.5 989,633 - DVU0896 0.86 +0.3 989,725 + -0.0 989,743 - +0.3 989,785 - -0.2 989,785 - +0.4 989,991 - DVU0897 0.12 +0.9 990,103 + DVU0897 0.20 +0.1 990,146 - DVU0897 0.23 +1.7 990,157 + DVU0897 0.24 -0.5 990,247 - DVU0897 0.31 +1.5 990,270 + DVU0897 0.32 -1.8 990,339 - DVU0897 0.37 -0.3 990,398 + DVU0897 0.41 +0.0 990,564 - DVU0897 0.54 +0.2 990,626 + DVU0897 0.58 +0.4 990,634 - DVU0897 0.59 -0.1 990,692 + DVU0897 0.63 -0.9 990,729 - DVU0897 0.66 +0.5
Or see this region's nucleotide sequence