Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0831 and DVU0832 are separated by 415 nucleotides DVU0832 and DVU0833 overlap by 59 nucleotides DVU0833 and rnhB overlap by 7 nucleotides
DVU0831: DVU0831 - PTS system, IID component, putative (TIGR), at 921,203 to 921,961
DVU0831
DVU0832: DVU0832 - tetrapyrrole methylase family protein (TIGR), at 922,377 to 923,204
DVU0832
DVU0833: DVU0833 - conserved hypothetical protein TIGR00252 (TIGR), at 923,146 to 923,550
DVU0833
DVU0834: rnhB - ribonuclease HII (TIGR), at 923,544 to 924,206
rnhB
Position (kb) 922
923
924 Strain fitness (log2 ratio) -2
-1
0
1
2 at 921.384 kb on + strand, within DVU0831 at 921.384 kb on + strand, within DVU0831 at 921.428 kb on - strand, within DVU0831 at 921.475 kb on + strand, within DVU0831 at 921.482 kb on - strand, within DVU0831 at 921.493 kb on + strand, within DVU0831 at 921.557 kb on - strand, within DVU0831 at 921.583 kb on + strand, within DVU0831 at 921.594 kb on + strand, within DVU0831 at 921.708 kb on - strand, within DVU0831 at 921.819 kb on + strand, within DVU0831 at 921.933 kb on + strand at 921.941 kb on - strand at 922.102 kb on + strand at 922.174 kb on - strand at 922.184 kb on - strand at 922.184 kb on - strand at 922.223 kb on - strand at 922.297 kb on - strand at 922.304 kb on - strand at 922.321 kb on - strand at 922.335 kb on - strand at 922.380 kb on + strand at 922.499 kb on - strand, within DVU0832 at 922.519 kb on - strand, within DVU0832 at 922.546 kb on + strand, within DVU0832 at 922.554 kb on - strand, within DVU0832 at 922.598 kb on - strand, within DVU0832 at 922.620 kb on + strand, within DVU0832 at 922.740 kb on + strand, within DVU0832 at 922.746 kb on - strand, within DVU0832 at 922.791 kb on + strand, within DVU0832 at 922.875 kb on + strand, within DVU0832 at 922.880 kb on - strand, within DVU0832 at 922.883 kb on - strand, within DVU0832 at 922.907 kb on + strand, within DVU0832 at 923.067 kb on + strand, within DVU0832 at 923.075 kb on - strand, within DVU0832 at 923.121 kb on - strand, within DVU0832 at 923.184 kb on - strand at 923.201 kb on - strand at 923.241 kb on + strand, within DVU0833 at 923.270 kb on + strand, within DVU0833 at 923.270 kb on + strand, within DVU0833 at 923.270 kb on + strand, within DVU0833 at 923.270 kb on + strand, within DVU0833 at 923.278 kb on - strand, within DVU0833 at 923.283 kb on - strand, within DVU0833 at 923.383 kb on + strand, within DVU0833 at 923.383 kb on + strand, within DVU0833 at 923.468 kb on + strand, within DVU0833 at 923.580 kb on + strand at 923.583 kb on - strand at 923.583 kb on - strand at 923.638 kb on + strand, within rnhB at 923.654 kb on - strand, within rnhB at 923.665 kb on + strand, within rnhB at 923.803 kb on + strand, within rnhB at 923.825 kb on + strand, within rnhB at 923.852 kb on - strand, within rnhB at 924.022 kb on + strand, within rnhB at 924.037 kb on + strand, within rnhB at 924.116 kb on + strand, within rnhB at 924.161 kb on - strand at 924.185 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM remove 921,384 + DVU0831 0.24 +1.1 921,384 + DVU0831 0.24 +2.4 921,428 - DVU0831 0.30 +1.3 921,475 + DVU0831 0.36 -0.2 921,482 - DVU0831 0.37 +0.7 921,493 + DVU0831 0.38 +1.9 921,557 - DVU0831 0.47 +1.6 921,583 + DVU0831 0.50 +1.0 921,594 + DVU0831 0.52 +1.4 921,708 - DVU0831 0.67 +1.5 921,819 + DVU0831 0.81 +1.2 921,933 + +0.9 921,941 - -1.0 922,102 + -1.1 922,174 - -0.6 922,184 - +0.2 922,184 - -0.6 922,223 - -1.6 922,297 - +1.0 922,304 - +1.4 922,321 - +1.7 922,335 - +0.1 922,380 + +0.1 922,499 - DVU0832 0.15 +0.9 922,519 - DVU0832 0.17 -2.2 922,546 + DVU0832 0.20 -1.0 922,554 - DVU0832 0.21 -1.2 922,598 - DVU0832 0.27 -1.4 922,620 + DVU0832 0.29 -1.3 922,740 + DVU0832 0.44 -0.5 922,746 - DVU0832 0.45 +0.7 922,791 + DVU0832 0.50 -1.0 922,875 + DVU0832 0.60 +0.1 922,880 - DVU0832 0.61 -0.6 922,883 - DVU0832 0.61 -0.9 922,907 + DVU0832 0.64 -1.0 923,067 + DVU0832 0.83 -0.6 923,075 - DVU0832 0.84 -0.6 923,121 - DVU0832 0.90 -1.7 923,184 - -0.7 923,201 - -1.5 923,241 + DVU0833 0.23 +0.7 923,270 + DVU0833 0.31 -0.1 923,270 + DVU0833 0.31 +1.3 923,270 + DVU0833 0.31 +0.1 923,270 + DVU0833 0.31 +0.5 923,278 - DVU0833 0.33 +0.7 923,283 - DVU0833 0.34 -0.2 923,383 + DVU0833 0.59 -0.0 923,383 + DVU0833 0.59 -0.8 923,468 + DVU0833 0.80 -0.6 923,580 + -0.9 923,583 - -0.6 923,583 - -0.2 923,638 + rnhB DVU0834 0.14 -0.1 923,654 - rnhB DVU0834 0.17 -0.4 923,665 + rnhB DVU0834 0.18 -1.8 923,803 + rnhB DVU0834 0.39 -0.1 923,825 + rnhB DVU0834 0.42 -0.4 923,852 - rnhB DVU0834 0.46 +0.0 924,022 + rnhB DVU0834 0.72 -0.5 924,037 + rnhB DVU0834 0.74 -1.3 924,116 + rnhB DVU0834 0.86 -1.0 924,161 - -0.4 924,185 + -0.3
Or see this region's nucleotide sequence