Experiment: KB with Resveratrol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1735 and Psyr_1736 are separated by 106 nucleotides Psyr_1736 and Psyr_1737 are separated by 299 nucleotides
Psyr_1735: Psyr_1735 - cysteinyl-tRNA synthetase, at 1,970,482 to 1,971,864
_1735
Psyr_1736: Psyr_1736 - Helix-turn-helix, Fis-type, at 1,971,971 to 1,973,824
_1736
Psyr_1737: Psyr_1737 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 1,974,124 to 1,975,218
_1737
Position (kb) 1971
1972
1973
1974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1971.884 kb on + strand at 1971.884 kb on + strand at 1971.884 kb on + strand at 1971.885 kb on - strand at 1971.888 kb on - strand at 1971.972 kb on + strand at 1971.972 kb on + strand at 1972.002 kb on + strand at 1972.002 kb on + strand at 1972.002 kb on + strand at 1972.002 kb on + strand at 1972.003 kb on - strand at 1972.280 kb on + strand, within Psyr_1736 at 1972.280 kb on + strand, within Psyr_1736 at 1972.281 kb on - strand, within Psyr_1736 at 1972.281 kb on - strand, within Psyr_1736 at 1972.420 kb on - strand, within Psyr_1736 at 1972.490 kb on + strand, within Psyr_1736 at 1972.490 kb on + strand, within Psyr_1736 at 1972.491 kb on - strand, within Psyr_1736 at 1972.492 kb on + strand, within Psyr_1736 at 1972.493 kb on - strand, within Psyr_1736 at 1973.847 kb on + strand at 1973.847 kb on + strand at 1973.847 kb on + strand at 1973.848 kb on - strand at 1973.848 kb on - strand at 1973.862 kb on + strand at 1973.971 kb on + strand at 1974.617 kb on - strand, within Psyr_1737 at 1974.673 kb on - strand, within Psyr_1737 at 1974.682 kb on - strand, within Psyr_1737 at 1974.682 kb on - strand, within Psyr_1737 at 1974.682 kb on - strand, within Psyr_1737 at 1974.685 kb on + strand, within Psyr_1737 at 1974.686 kb on - strand, within Psyr_1737 at 1974.784 kb on + strand, within Psyr_1737
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Resveratrol 10 mM remove 1,971,884 + -1.0 1,971,884 + -1.1 1,971,884 + -0.6 1,971,885 - -2.8 1,971,888 - -0.0 1,971,972 + +0.4 1,971,972 + +0.0 1,972,002 + -0.1 1,972,002 + +2.0 1,972,002 + -0.3 1,972,002 + -2.1 1,972,003 - +1.3 1,972,280 + Psyr_1736 0.17 +0.0 1,972,280 + Psyr_1736 0.17 -1.3 1,972,281 - Psyr_1736 0.17 -1.6 1,972,281 - Psyr_1736 0.17 +0.4 1,972,420 - Psyr_1736 0.24 -0.3 1,972,490 + Psyr_1736 0.28 -0.8 1,972,490 + Psyr_1736 0.28 -0.2 1,972,491 - Psyr_1736 0.28 -0.7 1,972,492 + Psyr_1736 0.28 -1.0 1,972,493 - Psyr_1736 0.28 -0.7 1,973,847 + +0.8 1,973,847 + -2.4 1,973,847 + -0.4 1,973,848 - +0.2 1,973,848 - +1.0 1,973,862 + -0.8 1,973,971 + +0.6 1,974,617 - Psyr_1737 0.45 -0.1 1,974,673 - Psyr_1737 0.50 +0.1 1,974,682 - Psyr_1737 0.51 -0.7 1,974,682 - Psyr_1737 0.51 -0.1 1,974,682 - Psyr_1737 0.51 +0.4 1,974,685 + Psyr_1737 0.51 -0.0 1,974,686 - Psyr_1737 0.51 +0.3 1,974,784 + Psyr_1737 0.60 +0.4
Or see this region's nucleotide sequence