Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1493

Experiment: KB with Resveratrol 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Resveratrol 10 mM
1,680,539	+		Psyr_1492	0.47	-1.0
1,680,539	+		Psyr_1492	0.47	+0.7
1,680,539	+		Psyr_1492	0.47	+0.1
1,680,540	-		Psyr_1492	0.47	+1.1
1,680,540	-		Psyr_1492	0.47	-0.5
1,680,540	-		Psyr_1492	0.47	+0.5
1,680,540	-		Psyr_1492	0.47	+0.5
1,680,579	+		Psyr_1492	0.51	-0.4
1,680,579	+		Psyr_1492	0.51	+0.7
1,680,655	+		Psyr_1492	0.59	-1.8
1,680,655	+		Psyr_1492	0.59	+1.1
1,680,655	+		Psyr_1492	0.59	+1.4
1,680,655	+		Psyr_1492	0.59	+1.1
1,680,656	-		Psyr_1492	0.59	-1.3
1,680,682	+		Psyr_1492	0.61	-0.7
1,680,682	+		Psyr_1492	0.61	-1.0
1,680,682	+		Psyr_1492	0.61	-0.9
1,680,683	-		Psyr_1492	0.62	+0.3
1,680,683	-		Psyr_1492	0.62	+1.6
1,680,687	+		Psyr_1492	0.62	-0.8
1,680,688	-		Psyr_1492	0.62	-0.4
1,680,688	-		Psyr_1492	0.62	-2.1
1,680,688	-		Psyr_1492	0.62	-0.9
1,680,719	+		Psyr_1492	0.65	+0.6
1,680,719	+		Psyr_1492	0.65	-1.0
1,680,719	+		Psyr_1492	0.65	-0.8
1,680,719	+		Psyr_1492	0.65	-1.1
1,680,719	+		Psyr_1492	0.65	+2.7
1,680,720	-		Psyr_1492	0.65	+0.3
1,680,720	-		Psyr_1492	0.65	-0.9
1,680,831	+		Psyr_1492	0.77	-1.1
1,680,831	+		Psyr_1492	0.77	-0.5
1,680,831	+		Psyr_1492	0.77	-1.3
1,680,831	+		Psyr_1492	0.77	+1.1
1,680,831	+		Psyr_1492	0.77	+0.2
1,680,831	+		Psyr_1492	0.77	-1.0
1,680,831	+		Psyr_1492	0.77	+0.6
1,680,831	+		Psyr_1492	0.77	-0.6
1,680,831	+		Psyr_1492	0.77	-0.1
1,680,831	+		Psyr_1492	0.77	+0.0
1,680,831	+		Psyr_1492	0.77	-1.6
1,680,831	+		Psyr_1492	0.77	-2.9
1,680,831	+		Psyr_1492	0.77	+0.7
1,680,831	+				+1.7
1,680,831	+		Psyr_1492	0.77	+2.1
1,680,831	+		Psyr_1492	0.77	-1.2
1,680,832	-		Psyr_1492	0.77	-0.1
1,680,832	-		Psyr_1492	0.77	-0.5
1,680,832	-		Psyr_1492	0.77	+1.1
1,680,832	-		Psyr_1492	0.77	+0.7
1,680,832	-		Psyr_1492	0.77	+0.6
1,680,832	-		Psyr_1492	0.77	-0.2
1,680,832	-		Psyr_1492	0.77	-0.9
1,680,832	-		Psyr_1492	0.77	-1.1
1,680,832	-		Psyr_1492	0.77	+1.1
1,680,832	-		Psyr_1492	0.77	+0.3
1,680,832	-		Psyr_1492	0.77	-1.1
1,680,832	-		Psyr_1492	0.77	-0.1
1,680,832	-		Psyr_1492	0.77	+0.0
1,680,832	-		Psyr_1492	0.77	-1.4
1,680,833	+		Psyr_1492	0.77	+1.0
1,680,833	+		Psyr_1492	0.77	-0.4
1,680,834	-		Psyr_1492	0.77	+1.6
1,680,914	+		Psyr_1492	0.86	+0.1
1,680,915	-		Psyr_1492	0.86	+0.4
1,680,915	-		Psyr_1492	0.86	+0.8
1,680,915	-		Psyr_1492	0.86	-0.5
1,680,996	+				-0.1
1,680,996	+				-0.7
1,680,996	+				+0.1
1,680,996	+				+0.1
1,680,996	+				-1.0
1,680,996	+				-0.3
1,680,996	+				-0.4
1,680,996	+				-1.9
1,680,996	+				+0.4
1,680,997	-				+0.5
1,680,997	-				+1.1
1,680,997	-				+0.5
1,680,997	-				-0.4
1,680,997	-				+0.9
1,680,997	-				+0.8
1,680,997	-				-0.2
1,681,035	+				-1.1
1,681,035	+				+0.1
1,681,035	+				+0.6
1,681,035	+				-1.2
1,681,035	+				-1.7
1,681,036	-				-0.2
1,681,037	+				+0.8
1,681,038	-				+1.3
1,681,047	+				-1.2
1,681,047	+				-0.3
1,681,047	+				-0.1
1,681,047	+				-0.6
1,681,048	-				-1.2
1,681,048	-				-0.7
1,681,048	-				-0.1
1,681,048	-				-0.4
1,681,048	-				-1.6
1,681,097	-				+1.4
1,681,126	+				-1.1
1,681,127	-				+0.1
1,681,133	+				+2.7
1,681,168	+				-0.9
1,681,168	+				+2.4
1,681,169	-				-1.2
1,681,169	-				-0.3
1,681,169	-				-2.7
1,681,169	-				-0.4
1,681,175	+				+1.1
1,681,175	+				+0.2
1,681,175	+				+0.4
1,681,175	+				-0.2
1,681,175	+				-0.4
1,681,175	+				+0.4
1,681,176	-				-0.3
1,681,176	-				+0.1
1,681,176	-				-0.7
1,681,176	-				+1.6
1,681,203	+				-0.6
1,681,211	-				-0.6
1,681,225	+				+3.1
1,681,225	+				+0.3
1,681,226	-				-1.4
1,681,226	-				+0.4
1,681,354	+				+0.6
1,681,354	+				-1.3
1,681,355	-				-1.6
1,681,355	-				-0.7
1,681,355	-				-0.0
1,681,376	-				+2.4
1,681,411	+				+0.1
1,681,412	-				-0.6
1,681,412	-				-3.4
1,681,412	-				-0.0
1,681,421	+				-0.1
1,681,457	+				+3.5
1,681,457	+				+1.0
1,681,457	+				-1.2
1,681,458	-				-2.2
1,681,467	+				+3.7
1,681,468	-				+0.9
1,681,468	-				+1.1
1,681,485	+				-0.0
1,681,485	+				-1.9
1,681,485	+				-1.4
1,681,485	+				+0.1
1,681,486	-				+0.1
1,681,486	-				+0.7
1,681,503	-				+0.3
1,681,542	+				-0.3
1,681,542	+				+0.8
1,681,543	-				-2.9
1,681,543	-				-0.5
1,681,577	+				-2.3
1,681,577	+				+0.7
1,681,577	+				+1.1
1,681,578	-				-2.0
1,681,578	-				-0.3
1,681,578	-				-0.4
1,681,578	-				+1.1
1,681,578	-				+0.6
1,681,578	-				-0.9
1,681,578	-				-1.2
1,681,657	+				+0.8
1,681,657	+				+1.5
1,681,668	+				-1.0
1,681,669	-				-0.3
1,681,814	+		Psyr_1493	0.16	+0.7
1,681,814	+		Psyr_1493	0.16	-0.7
1,681,815	-		Psyr_1493	0.16	-1.5
1,681,815	-		Psyr_1493	0.16	-0.9
1,681,815	-		Psyr_1493	0.16	-0.0
1,681,815	-		Psyr_1493	0.16	-1.6
1,681,815	-		Psyr_1493	0.16	+2.7
1,681,856	+		Psyr_1493	0.19	+1.5
1,681,857	-		Psyr_1493	0.19	-1.7
1,681,897	+		Psyr_1493	0.21	-0.4
1,681,897	+		Psyr_1493	0.21	+0.3
1,681,898	-		Psyr_1493	0.21	-0.5
1,681,898	-		Psyr_1493	0.21	-1.8
1,681,898	-		Psyr_1493	0.21	-0.3
1,681,898	-		Psyr_1493	0.21	-0.4
1,681,898	-		Psyr_1493	0.21	+3.5
1,681,898	-		Psyr_1493	0.21	+1.4
1,681,898	-		Psyr_1493	0.21	-1.0
1,681,904	-		Psyr_1493	0.21	-0.6
1,681,933	+		Psyr_1493	0.23	+1.1
1,681,933	+		Psyr_1493	0.23	+1.0
1,681,933	+		Psyr_1493	0.23	-0.4
1,681,933	+		Psyr_1493	0.23	+0.1
1,681,933	+		Psyr_1493	0.23	-0.3
1,681,933	+		Psyr_1493	0.23	-0.6
1,681,933	+		Psyr_1493	0.23	-0.4
1,681,933	+		Psyr_1493	0.23	+1.1
1,681,933	+		Psyr_1493	0.23	-1.7
1,681,933	+		Psyr_1493	0.23	+0.7
1,681,934	-		Psyr_1493	0.23	-0.7
1,681,934	-		Psyr_1493	0.23	-1.6
1,681,934	-		Psyr_1493	0.23	-0.6
1,681,934	-		Psyr_1493	0.23	-2.0
1,681,934	-		Psyr_1493	0.23	-0.3
1,681,934	-		Psyr_1493	0.23	+0.1
1,681,939	+		Psyr_1493	0.23	-1.6
1,681,940	-		Psyr_1493	0.23	-0.0
1,681,940	-		Psyr_1493	0.23	+0.8
1,681,978	+		Psyr_1493	0.25	+0.3
1,681,979	-		Psyr_1493	0.25	-0.3
1,682,023	+		Psyr_1493	0.28	+0.5
1,682,024	-		Psyr_1493	0.28	-2.9
1,682,024	-		Psyr_1493	0.28	-2.8
1,682,111	-		Psyr_1493	0.33	-0.3
1,682,111	-		Psyr_1493	0.33	-1.5
1,682,113	+		Psyr_1493	0.33	-0.1
1,682,113	+		Psyr_1493	0.33	+1.6
1,682,113	+		Psyr_1493	0.33	+0.7
1,682,113	+		Psyr_1493	0.33	-0.8
1,682,113	+		Psyr_1493	0.33	+0.0
1,682,113	+		Psyr_1493	0.33	+1.0
1,682,114	-		Psyr_1493	0.33	-0.4
1,682,114	-		Psyr_1493	0.33	-0.6
1,682,114	-		Psyr_1493	0.33	+1.1
1,682,114	-		Psyr_1493	0.33	+2.1
1,682,254	+		Psyr_1493	0.40	-0.9
1,682,254	+		Psyr_1493	0.40	-0.9
1,682,254	+		Psyr_1493	0.40	-0.1
1,682,254	+		Psyr_1493	0.40	-1.1
1,682,254	+		Psyr_1493	0.40	-0.4
1,682,254	+		Psyr_1493	0.40	-1.0
1,682,254	+		Psyr_1493	0.40	-1.1
1,682,255	-		Psyr_1493	0.40	-0.4
1,682,255	-		Psyr_1493	0.40	-0.3
1,682,255	-		Psyr_1493	0.40	-0.2
1,682,255	-		Psyr_1493	0.40	-0.0
1,682,255	-		Psyr_1493	0.40	-0.2
1,682,255	-		Psyr_1493	0.40	+1.3
1,682,255	-		Psyr_1493	0.40	-0.6
1,682,255	-		Psyr_1493	0.40	+0.1
1,682,260	+		Psyr_1493	0.41	+1.1
1,682,260	+		Psyr_1493	0.41	-1.8
1,682,260	+		Psyr_1493	0.41	-0.1
1,682,261	-		Psyr_1493	0.41	-2.3
1,682,261	-		Psyr_1493	0.41	-0.8
1,682,261	-		Psyr_1493	0.41	+0.6
1,682,261	-		Psyr_1493	0.41	+0.1
1,682,286	+		Psyr_1493	0.42	-0.2
1,682,286	+		Psyr_1493	0.42	+0.6
1,682,352	+		Psyr_1493	0.46	-1.2
1,682,359	+		Psyr_1493	0.46	+1.4
1,682,359	+		Psyr_1493	0.46	-1.6
1,682,359	+		Psyr_1493	0.46	+0.8
1,682,359	+		Psyr_1493	0.46	-0.2
1,682,359	+		Psyr_1493	0.46	-0.1
1,682,359	+		Psyr_1493	0.46	-0.7
1,682,360	-		Psyr_1493	0.46	+0.7
1,682,360	-		Psyr_1493	0.46	-0.9
1,682,360	-		Psyr_1493	0.46	+0.5
1,682,360	-		Psyr_1493	0.46	-0.4
1,682,360	-		Psyr_1493	0.46	+1.5
1,682,399	+		Psyr_1493	0.48	+0.6
1,682,417	-		Psyr_1493	0.49	-0.0
1,682,444	+		Psyr_1493	0.51	-0.4
1,682,444	+		Psyr_1493	0.51	+2.1
1,682,444	+		Psyr_1493	0.51	-0.2
1,682,444	+		Psyr_1493	0.51	-2.3
1,682,444	+		Psyr_1493	0.51	-0.4
1,682,445	-		Psyr_1493	0.51	-1.9
1,682,500	+		Psyr_1493	0.54	+0.0
1,682,501	-		Psyr_1493	0.54	-1.4
1,682,611	-		Psyr_1493	0.60	-0.1
1,682,622	+		Psyr_1493	0.61	-1.6
1,682,637	+		Psyr_1493	0.61	-1.4
1,682,638	-		Psyr_1493	0.61	+4.0
1,682,718	+		Psyr_1493	0.66	+1.3
1,682,718	+		Psyr_1493	0.66	-1.3
1,682,718	+		Psyr_1493	0.66	+0.3
1,682,718	+		Psyr_1493	0.66	-0.6
1,682,719	-		Psyr_1493	0.66	-0.9
1,682,719	-		Psyr_1493	0.66	+0.5
1,682,719	-		Psyr_1493	0.66	-1.1
1,682,719	-		Psyr_1493	0.66	+1.1
1,682,814	-		Psyr_1493	0.71	-0.6
1,682,814	-		Psyr_1493	0.71	+0.0
1,682,903	+		Psyr_1493	0.76	-0.8
1,682,904	-		Psyr_1493	0.76	-0.1
1,682,913	+		Psyr_1493	0.77	-0.3
1,682,916	+		Psyr_1493	0.77	-0.8
1,682,916	+		Psyr_1493	0.77	-0.9
1,682,938	+		Psyr_1493	0.78	-0.5
1,682,938	+		Psyr_1493	0.78	-0.4
1,682,938	+		Psyr_1493	0.78	+0.3
1,682,938	+		Psyr_1493	0.78	-0.2
1,682,938	+		Psyr_1493	0.78	+1.6
1,682,938	+		Psyr_1493	0.78	+0.8
1,682,939	-		Psyr_1493	0.78	-0.6
1,682,939	-		Psyr_1493	0.78	-0.1
1,682,950	-		Psyr_1493	0.79	+1.1
1,682,950	-		Psyr_1493	0.79	-1.6
1,682,950	-		Psyr_1493	0.79	+1.6
1,682,950	-		Psyr_1493	0.79	-2.0
1,683,085	+		Psyr_1493	0.86	+2.6
1,683,275	-				-2.1
1,683,293	-				+0.1
1,683,309	+				-0.8
1,683,309	+				+1.1
1,683,309	+				-0.5
1,683,309	+				+1.5
1,683,309	+				+0.6
1,683,310	-				-2.6
1,683,310	-				+1.0
1,683,310	-				-0.6
1,683,310	-				+1.1
1,683,503	+		Psyr_1494	0.17	+0.3
1,683,566	+		Psyr_1494	0.24	+0.4
1,683,584	+		Psyr_1494	0.25	+2.7
1,683,585	-		Psyr_1494	0.26	+0.9
1,683,662	+		Psyr_1494	0.34	-0.1
1,683,662	+		Psyr_1494	0.34	+0.5
1,683,662	+		Psyr_1494	0.34	-1.4
1,683,663	-		Psyr_1494	0.34	-1.8
1,683,666	+		Psyr_1494	0.34	+0.4
1,683,666	+		Psyr_1494	0.34	+0.9
1,683,666	+		Psyr_1494	0.34	-1.2
1,683,666	+		Psyr_1494	0.34	-0.7
1,683,666	+		Psyr_1494	0.34	+0.3
1,683,666	+		Psyr_1494	0.34	+0.4
1,683,666	+		Psyr_1494	0.34	+1.1
1,683,666	+		Psyr_1494	0.34	+0.0
1,683,667	-		Psyr_1494	0.34	+0.1
1,683,667	-		Psyr_1494	0.34	+0.7
1,683,667	-		Psyr_1494	0.34	-0.4
1,683,667	-		Psyr_1494	0.34	-1.4
1,683,792	-		Psyr_1494	0.48	+0.5
1,683,792	-		Psyr_1494	0.48	+0.6
1,683,792	-		Psyr_1494	0.48	-0.8
1,683,942	+		Psyr_1494	0.64	-1.2
1,683,942	+		Psyr_1494	0.64	+0.4
1,683,942	+		Psyr_1494	0.64	-0.0
1,683,942	+		Psyr_1494	0.64	-0.3
1,683,942	+		Psyr_1494	0.64	-3.2
1,683,942	+		Psyr_1494	0.64	+1.4
1,683,942	+		Psyr_1494	0.64	-0.8
1,683,942	+		Psyr_1494	0.64	+1.1
1,683,942	+		Psyr_1494	0.64	-0.1
1,683,942	+		Psyr_1494	0.64	-0.1
1,683,943	-		Psyr_1494	0.64	+0.1
1,683,943	-		Psyr_1494	0.64	-0.5
1,683,943	-		Psyr_1494	0.64	+1.9
1,683,943	-		Psyr_1494	0.64	+0.5
1,684,014	+		Psyr_1494	0.71	-1.9
1,684,015	-		Psyr_1494	0.71	+0.4
1,684,027	+		Psyr_1494	0.73	-0.2
1,684,170	+		Psyr_1494	0.88	-0.9
1,684,170	+		Psyr_1494	0.88	+0.3
1,684,171	-		Psyr_1494	0.88	-1.4
1,684,171	-		Psyr_1494	0.88	+2.4
1,684,202	+				-2.2
1,684,202	+				+0.6
1,684,202	+				+0.3
1,684,202	+				+0.5
1,684,205	+				-1.1
1,684,205	+				+0.7
1,684,205	+				-0.2
1,684,205	+				-0.7
1,684,205	+				-0.9
1,684,206	-				-0.2
1,684,206	-				-0.1
1,684,206	-				-2.7
1,684,206	-				+0.0
1,684,206	-				+2.0
1,684,206	-				-2.0
1,684,256	-				-0.9
1,684,271	+				+0.4
1,684,271	+				-0.3
1,684,271	+				-0.8
1,684,271	+				+1.1
1,684,271	+				-0.4
1,684,271	+				+1.0
1,684,271	+				+1.2
1,684,271	+				+0.1
1,684,271	+				-1.0
1,684,271	+				+2.5
1,684,272	-				-0.4
1,684,272	-				-0.0
1,684,272	-				-1.0
1,684,272	-				-1.3
1,684,272	-				-0.4
1,684,272	-				-0.2
1,684,272	-				-0.4
1,684,272	-				-1.7
1,684,272	-				-0.4
1,684,272	-				-0.4
1,684,309	-				-0.3
1,684,336	+				+0.7
1,684,337	-				+0.4