Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1135

Experiment: KB with Resveratrol 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1133 and Psyr_1134 overlap by 4 nucleotidesPsyr_1134 and Psyr_1135 are separated by 1 nucleotidesPsyr_1135 and Psyr_1136 are separated by 93 nucleotidesPsyr_1136 and Psyr_1137 are separated by 17 nucleotides Psyr_1133: Psyr_1133 - Fimbrial biogenesis outer membrane usher protein, at 1,283,830 to 1,286,364 _1133 Psyr_1134: Psyr_1134 - pili assembly chaperone, at 1,286,361 to 1,287,146 _1134 Psyr_1135: Psyr_1135 - conserved hypothetical protein, at 1,287,148 to 1,288,146 _1135 Psyr_1136: Psyr_1136 - conserved hypothetical protein, at 1,288,240 to 1,288,464 _1136 Psyr_1137: Psyr_1137 - Protein of unknown function UPF0153, at 1,288,482 to 1,289,237 _1137 Position (kb) 1287 1288 1289Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1286.336 kb on - strandat 1286.354 kb on + strandat 1286.462 kb on - strand, within Psyr_1134at 1286.530 kb on + strand, within Psyr_1134at 1286.662 kb on - strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.709 kb on + strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.710 kb on - strand, within Psyr_1134at 1286.788 kb on - strand, within Psyr_1134at 1287.051 kb on + strand, within Psyr_1134at 1287.147 kb on + strandat 1287.147 kb on + strandat 1287.200 kb on + strandat 1287.200 kb on + strandat 1287.234 kb on + strandat 1287.234 kb on + strandat 1287.283 kb on - strand, within Psyr_1135at 1287.399 kb on + strand, within Psyr_1135at 1287.400 kb on - strand, within Psyr_1135at 1287.404 kb on - strand, within Psyr_1135at 1287.458 kb on + strand, within Psyr_1135at 1287.508 kb on + strand, within Psyr_1135at 1287.508 kb on + strand, within Psyr_1135at 1287.509 kb on - strand, within Psyr_1135at 1287.607 kb on - strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.706 kb on + strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.707 kb on - strand, within Psyr_1135at 1287.801 kb on - strand, within Psyr_1135at 1288.000 kb on + strand, within Psyr_1135at 1288.000 kb on + strand, within Psyr_1135at 1288.001 kb on - strand, within Psyr_1135at 1288.001 kb on - strand, within Psyr_1135at 1288.001 kb on - strand, within Psyr_1135at 1288.138 kb on + strandat 1288.139 kb on - strandat 1288.181 kb on + strandat 1288.182 kb on - strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.186 kb on + strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.187 kb on - strandat 1288.510 kb on + strandat 1288.678 kb on + strand, within Psyr_1137at 1288.752 kb on + strand, within Psyr_1137at 1288.752 kb on + strand, within Psyr_1137at 1288.752 kb on + strand, within Psyr_1137at 1288.753 kb on - strand, within Psyr_1137at 1288.753 kb on - strand, within Psyr_1137at 1288.805 kb on + strand, within Psyr_1137at 1288.916 kb on - strand, within Psyr_1137at 1288.945 kb on + strand, within Psyr_1137at 1288.945 kb on + strand, within Psyr_1137at 1288.945 kb on + strand, within Psyr_1137at 1288.946 kb on - strand, within Psyr_1137at 1288.946 kb on - strand, within Psyr_1137at 1288.946 kb on - strand, within Psyr_1137at 1288.946 kb on - strand, within Psyr_1137at 1288.996 kb on + strand, within Psyr_1137at 1288.996 kb on + strand, within Psyr_1137at 1288.996 kb on + strand, within Psyr_1137at 1288.996 kb on + strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1288.997 kb on - strand, within Psyr_1137at 1289.030 kb on + strand, within Psyr_1137at 1289.031 kb on - strand, within Psyr_1137

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Resveratrol 10 mM
remove
1,286,336 - -1.3
1,286,354 + -0.2
1,286,462 - Psyr_1134 0.13 +1.0
1,286,530 + Psyr_1134 0.22 -0.9
1,286,662 - Psyr_1134 0.38 +0.1
1,286,709 + Psyr_1134 0.44 +2.0
1,286,709 + Psyr_1134 0.44 -2.3
1,286,709 + Psyr_1134 0.44 -2.6
1,286,709 + Psyr_1134 0.44 +0.1
1,286,709 + Psyr_1134 0.44 -0.5
1,286,709 + Psyr_1134 0.44 +3.1
1,286,709 + Psyr_1134 0.44 -0.3
1,286,709 + Psyr_1134 0.44 +0.2
1,286,709 + Psyr_1134 0.44 -0.7
1,286,709 + Psyr_1134 0.44 +0.2
1,286,709 + Psyr_1134 0.44 +0.1
1,286,709 + Psyr_1134 0.44 -1.0
1,286,709 + Psyr_1134 0.44 -0.4
1,286,709 + Psyr_1134 0.44 -0.5
1,286,710 - Psyr_1134 0.44 +0.6
1,286,710 - Psyr_1134 0.44 +0.5
1,286,710 - Psyr_1134 0.44 -0.3
1,286,710 - Psyr_1134 0.44 -1.0
1,286,710 - Psyr_1134 0.44 +0.1
1,286,710 - Psyr_1134 0.44 -0.2
1,286,710 - Psyr_1134 0.44 +2.1
1,286,710 - Psyr_1134 0.44 -0.0
1,286,710 - Psyr_1134 0.44 -0.7
1,286,710 - Psyr_1134 0.44 -0.8
1,286,710 - Psyr_1134 0.44 +0.4
1,286,710 - Psyr_1134 0.44 -1.1
1,286,710 - Psyr_1134 0.44 -0.2
1,286,710 - Psyr_1134 0.44 +0.8
1,286,788 - Psyr_1134 0.54 -0.3
1,287,051 + Psyr_1134 0.88 +0.6
1,287,147 + +0.7
1,287,147 + -1.3
1,287,200 + +0.9
1,287,200 + +0.1
1,287,234 + -0.2
1,287,234 + +0.8
1,287,283 - Psyr_1135 0.14 +0.0
1,287,399 + Psyr_1135 0.25 -0.1
1,287,400 - Psyr_1135 0.25 -0.1
1,287,404 - Psyr_1135 0.26 -1.9
1,287,458 + Psyr_1135 0.31 -0.7
1,287,508 + Psyr_1135 0.36 -0.6
1,287,508 + Psyr_1135 0.36 +0.6
1,287,509 - Psyr_1135 0.36 -0.5
1,287,607 - Psyr_1135 0.46 -0.2
1,287,706 + Psyr_1135 0.56 +0.7
1,287,706 + Psyr_1135 0.56 -0.4
1,287,706 + Psyr_1135 0.56 -2.0
1,287,706 + Psyr_1135 0.56 -2.5
1,287,706 + Psyr_1135 0.56 -1.5
1,287,706 + Psyr_1135 0.56 -2.3
1,287,707 - Psyr_1135 0.56 -0.2
1,287,707 - Psyr_1135 0.56 -0.6
1,287,707 - Psyr_1135 0.56 +0.8
1,287,707 - Psyr_1135 0.56 -0.3
1,287,707 - Psyr_1135 0.56 -0.8
1,287,707 - Psyr_1135 0.56 -0.0
1,287,707 - Psyr_1135 0.56 +0.3
1,287,707 - Psyr_1135 0.56 -1.0
1,287,801 - Psyr_1135 0.65 -0.9
1,288,000 + Psyr_1135 0.85 +0.1
1,288,000 + Psyr_1135 0.85 -1.5
1,288,001 - Psyr_1135 0.85 -0.5
1,288,001 - Psyr_1135 0.85 +1.4
1,288,001 - Psyr_1135 0.85 +0.2
1,288,138 + +0.1
1,288,139 - +0.2
1,288,181 + -0.3
1,288,182 - -0.7
1,288,186 + +0.1
1,288,186 + +0.0
1,288,186 + +2.1
1,288,186 + -0.8
1,288,186 + -0.2
1,288,186 + +0.9
1,288,186 + -0.3
1,288,186 + +1.1
1,288,186 + -0.2
1,288,186 + +0.4
1,288,186 + -0.2
1,288,187 - -2.0
1,288,187 - -0.3
1,288,187 - -0.5
1,288,187 - +1.2
1,288,187 - -1.2
1,288,187 - +0.5
1,288,187 - +0.3
1,288,187 - +0.3
1,288,187 - -0.5
1,288,187 - -0.3
1,288,187 - -1.5
1,288,187 - +0.5
1,288,187 - +0.5
1,288,187 - -0.4
1,288,187 - -0.1
1,288,187 - +3.4
1,288,510 + +0.1
1,288,678 + Psyr_1137 0.26 +0.7
1,288,752 + Psyr_1137 0.36 -0.2
1,288,752 + Psyr_1137 0.36 -0.1
1,288,752 + Psyr_1137 0.36 +0.7
1,288,753 - Psyr_1137 0.36 -0.1
1,288,753 - Psyr_1137 0.36 +0.8
1,288,805 + Psyr_1137 0.43 -1.9
1,288,916 - Psyr_1137 0.57 -0.3
1,288,945 + Psyr_1137 0.61 +0.0
1,288,945 + Psyr_1137 0.61 -0.3
1,288,945 + Psyr_1137 0.61 +0.8
1,288,946 - Psyr_1137 0.61 +0.6
1,288,946 - Psyr_1137 0.61 +1.8
1,288,946 - Psyr_1137 0.61 -0.4
1,288,946 - Psyr_1137 0.61 +0.2
1,288,996 + Psyr_1137 0.68 +1.1
1,288,996 + Psyr_1137 0.68 -1.2
1,288,996 + Psyr_1137 0.68 -0.3
1,288,996 + Psyr_1137 0.68 -1.5
1,288,997 - Psyr_1137 0.68 +0.4
1,288,997 - Psyr_1137 0.68 -0.6
1,288,997 - Psyr_1137 0.68 -0.4
1,288,997 - Psyr_1137 0.68 -0.6
1,288,997 - Psyr_1137 0.68 -0.4
1,289,030 + Psyr_1137 0.72 +0.1
1,289,031 - Psyr_1137 0.73 -0.0

Or see this region's nucleotide sequence