Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26845

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
5,992,262	+				-0.3
5,992,262	+				+1.3
5,992,262	+				+0.8
5,992,263	-				+0.2
5,992,337	+				-1.0
5,992,337	+				-0.2
5,992,337	+				-0.5
5,992,337	+				-1.1
5,992,337	+				+1.7
5,992,337	+				-3.1
5,992,337	+				-1.6
5,992,337	+				-2.1
5,992,337	+				-0.2
5,992,337	+				-0.5
5,992,337	+				-1.7
5,992,337	+				+3.7
5,992,337	+				-1.9
5,992,337	+				+0.7
5,992,337	+				-2.5
5,992,337	+				-1.8
5,992,337	+				-2.1
5,992,337	+				+1.2
5,992,337	+				-0.6
5,992,337	+				-2.6
5,992,337	+				+1.3
5,992,337	+				-0.1
5,992,339	+				+0.3
5,992,339	+				-2.6
5,992,339	+				-1.1
5,992,339	+				-1.8
5,992,339	+				+1.3
5,992,339	+				-0.2
5,992,339	+				+0.7
5,992,339	+				-1.8
5,992,339	+				+1.3
5,992,339	+				-3.5
5,992,339	+				+1.5
5,992,339	+				-0.5
5,992,339	+				-1.3
5,992,339	+				+2.8
5,992,343	+				-0.5
5,992,343	+				-1.6
5,992,343	+				+0.3
5,992,343	+				+1.0
5,992,343	+				-1.1
5,992,343	+				+2.1
5,992,343	+				+0.3
5,992,343	+				-1.1
5,992,343	+				+0.2
5,992,343	+				-0.9
5,992,343	+				+0.9
5,992,343	+				+1.7
5,992,343	+				+1.4
5,992,343	+				+0.1
5,992,343	+				+1.4
5,992,343	+				+1.3
5,992,343	+				+0.3
5,992,343	+				-0.1
5,992,343	+				+1.5
5,992,343	+				-0.7
5,992,343	+				+0.1
5,992,343	+				-0.8
5,994,226	+				-1.0
5,994,255	+				+1.3
5,994,256	-				+1.2
5,994,256	-				+0.3
5,994,256	-				+0.4
5,994,256	-				-2.7
5,994,304	+				-1.6
5,994,304	+				-0.4
5,994,304	+				-3.2
5,994,304	+				+2.3
5,994,304	+				+0.4
5,994,304	+				-2.3
5,994,304	+				+3.5
5,994,304	+				+2.0
5,994,304	+				-1.6
5,994,304	+				-1.7
5,994,305	-				+0.9
5,994,305	-				+0.8
5,994,305	-				-2.2
5,994,305	-				+1.3
5,994,305	-				+0.2
5,994,305	-				-2.3
5,994,305	-				+1.9
5,994,305	-				+2.1
5,994,305	-				-1.0
5,994,305	-				-1.9
5,994,305	-				-0.5
5,994,305	-				+0.1
5,994,305	-				+1.0
5,994,305	-				+1.8
5,994,308	+				-1.1
5,994,308	+				+1.4
5,994,308	+				+1.1
5,994,308	+				-0.1
5,994,308	+				-2.9
5,994,308	+				-0.8
5,994,308	+				+0.2
5,994,308	+				-0.2
5,994,308	+				-1.5
5,994,308	+				-2.3
5,994,308	+				-0.8
5,994,309	-				+2.0
5,994,309	-				-1.6
5,994,309	-				+1.5
5,994,309	-				-2.0
5,994,309	-				-0.6
5,994,309	-				+0.1
5,994,324	-				-2.3
5,994,324	-				-3.9
5,994,523	+				-2.7
5,994,561	+		PFLU_RS26850	0.12	-1.3
5,994,561	+		PFLU_RS26850	0.12	-2.9
5,994,561	+		PFLU_RS26850	0.12	-3.0
5,994,561	+		PFLU_RS26850	0.12	-2.7
5,994,561	+		PFLU_RS26850	0.12	-1.6
5,994,562	-		PFLU_RS26850	0.12	+1.3
5,994,562	-		PFLU_RS26850	0.12	+0.3
5,994,562	-		PFLU_RS26850	0.12	+1.7
5,994,562	-		PFLU_RS26850	0.12	+0.1
5,994,562	-		PFLU_RS26850	0.12	+1.5
5,994,605	+		PFLU_RS26850	0.14	-0.5
5,994,605	+		PFLU_RS26850	0.14	-3.1
5,994,605	+		PFLU_RS26850	0.14	-1.6
5,994,605	+		PFLU_RS26850	0.14	-2.7
5,994,605	+		PFLU_RS26850	0.14	+2.1
5,994,605	+		PFLU_RS26850	0.14	+3.0
5,994,605	+		PFLU_RS26850	0.14	-2.5
5,994,605	+		PFLU_RS26850	0.14	-1.6
5,994,605	+		PFLU_RS26850	0.14	+0.3
5,994,605	+		PFLU_RS26850	0.14	+1.8
5,994,605	+		PFLU_RS26850	0.14	-0.4
5,994,605	+		PFLU_RS26850	0.14	+1.9
5,994,605	+		PFLU_RS26850	0.14	+0.1
5,994,605	+		PFLU_RS26850	0.14	-0.4
5,994,605	+		PFLU_RS26850	0.14	+1.6
5,994,605	+		PFLU_RS26850	0.14	-2.9
5,994,606	-		PFLU_RS26850	0.14	-2.2
5,994,606	-		PFLU_RS26850	0.14	-1.3
5,994,606	-		PFLU_RS26850	0.14	+0.2
5,994,606	-		PFLU_RS26850	0.14	-2.9
5,994,606	-		PFLU_RS26850	0.14	-1.4
5,994,606	-		PFLU_RS26850	0.14	-3.2
5,994,606	-		PFLU_RS26850	0.14	-1.2
5,994,606	-		PFLU_RS26850	0.14	+0.3
5,994,606	-		PFLU_RS26850	0.14	-0.3
5,994,606	-		PFLU_RS26850	0.14	+1.9
5,994,606	-		PFLU_RS26850	0.14	-0.4
5,994,606	-		PFLU_RS26850	0.14	-1.6
5,994,606	-		PFLU_RS26850	0.14	+1.7
5,994,606	-		PFLU_RS26850	0.14	+1.4
5,994,607	+		PFLU_RS26850	0.14	+0.4
5,994,607	+		PFLU_RS26850	0.14	-1.7
5,994,607	+		PFLU_RS26850	0.14	+1.4
5,994,607	+		PFLU_RS26850	0.14	-2.0
5,994,607	+		PFLU_RS26850	0.14	+1.9
5,994,607	+		PFLU_RS26850	0.14	+2.7
5,994,607	+		PFLU_RS26850	0.14	-1.5
5,994,608	-		PFLU_RS26850	0.14	-3.2
5,994,608	-		PFLU_RS26850	0.14	-1.2
5,994,608	-		PFLU_RS26850	0.14	-1.1
5,994,608	-		PFLU_RS26850	0.14	-1.2
5,994,668	-		PFLU_RS26850	0.18	+1.2
5,994,668	-		PFLU_RS26850	0.18	-1.6
5,994,668	-		PFLU_RS26850	0.18	+1.3
5,994,695	+		PFLU_RS26850	0.19	-3.0
5,994,695	+		PFLU_RS26850	0.19	+1.1
5,994,696	-		PFLU_RS26850	0.19	-3.6
5,994,696	-		PFLU_RS26850	0.19	+1.2
5,994,696	-		PFLU_RS26850	0.19	+0.9
5,994,696	-		PFLU_RS26850	0.19	+1.1
5,994,696	-		PFLU_RS26850	0.19	-1.9
5,994,696	-		PFLU_RS26850	0.19	-2.7
5,994,755	+		PFLU_RS26850	0.22	+0.1
5,994,755	+		PFLU_RS26850	0.22	-1.9
5,994,755	+		PFLU_RS26850	0.22	+2.6
5,994,755	+		PFLU_RS26850	0.22	+2.8
5,994,755	+		PFLU_RS26850	0.22	-1.0
5,994,755	+		PFLU_RS26850	0.22	-2.7
5,994,755	+		PFLU_RS26850	0.22	-3.5
5,994,755	+		PFLU_RS26850	0.22	-1.1
5,994,755	+		PFLU_RS26850	0.22	-0.9
5,994,755	+		PFLU_RS26850	0.22	+0.4
5,994,755	+		PFLU_RS26850	0.22	+0.2
5,994,756	-		PFLU_RS26850	0.22	+0.1
5,994,756	-		PFLU_RS26850	0.22	+2.7
5,994,756	-		PFLU_RS26850	0.22	-0.7
5,994,756	-		PFLU_RS26850	0.22	-0.4
5,994,756	-		PFLU_RS26850	0.22	-1.4
5,994,756	-		PFLU_RS26850	0.22	-0.4
5,994,756	-		PFLU_RS26850	0.22	+0.3
5,994,756	-		PFLU_RS26850	0.22	+3.6
5,994,756	-		PFLU_RS26850	0.22	-1.0
5,994,756	-		PFLU_RS26850	0.22	+2.5
5,994,793	+		PFLU_RS26850	0.24	-2.3
5,994,794	-		PFLU_RS26850	0.24	+3.5
5,994,794	-		PFLU_RS26850	0.24	-0.0
5,994,819	+		PFLU_RS26850	0.26	-1.0
5,994,819	+		PFLU_RS26850	0.26	-0.7
5,994,820	-		PFLU_RS26850	0.26	-1.4
5,994,820	-		PFLU_RS26850	0.26	+0.3
5,994,989	+		PFLU_RS26850	0.34	+0.8
5,995,085	+		PFLU_RS26850	0.40	+0.4
5,995,086	-		PFLU_RS26850	0.40	-2.6
5,995,086	-		PFLU_RS26850	0.40	-3.6
5,995,086	-		PFLU_RS26850	0.40	+1.2
5,995,086	-		PFLU_RS26850	0.40	-1.1
5,995,146	-		PFLU_RS26850	0.43	+0.9
5,995,154	+		PFLU_RS26850	0.43	-1.4
5,995,154	+		PFLU_RS26850	0.43	-0.8
5,995,154	+		PFLU_RS26850	0.43	-1.4
5,995,178	+		PFLU_RS26850	0.44	-1.8
5,995,178	+		PFLU_RS26850	0.44	+3.1
5,995,178	+		PFLU_RS26850	0.44	+1.6
5,995,179	-		PFLU_RS26850	0.45	+0.7
5,995,179	-		PFLU_RS26850	0.45	-2.1
5,995,179	-		PFLU_RS26850	0.45	+2.2
5,995,179	-		PFLU_RS26850	0.45	+0.1
5,995,246	+		PFLU_RS26850	0.48	-1.6