Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS08240

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs
1,841,973	+				-1.7
1,841,973	+				-0.1
1,842,048	+				+0.7
1,842,048	+				+0.8
1,842,049	-				-3.3
1,842,067	+				-0.8
1,842,067	+				+0.9
1,842,067	+				+2.2
1,842,067	+				-3.3
1,842,067	+				-0.2
1,842,067	+				+1.7
1,842,067	+				+1.8
1,842,067	+				-0.3
1,842,067	+				+1.9
1,842,067	+				-3.0
1,842,067	+				-1.0
1,842,067	+				-0.2
1,842,067	+				-2.2
1,842,067	+				-0.1
1,842,068	-				-0.6
1,842,068	-				+1.7
1,842,068	-				-2.3
1,842,068	-				+0.5
1,842,068	-				+0.9
1,842,068	-				+2.0
1,842,068	-				-0.6
1,842,068	-				-0.0
1,842,068	-				-3.9
1,842,113	+				-2.8
1,842,113	+				+1.0
1,842,114	-				+2.2
1,842,114	-				-1.3
1,842,114	-				+0.9
1,842,114	-				-1.6
1,842,114	-				-1.0
1,842,114	-				-1.5
1,842,401	+		PFLU_RS08235	0.53	+0.7
1,842,401	+		PFLU_RS08235	0.53	+0.8
1,842,402	-		PFLU_RS08235	0.53	-2.8
1,842,402	-		PFLU_RS08235	0.53	-1.7
1,842,402	-		PFLU_RS08235	0.53	+1.1
1,842,402	-		PFLU_RS08235	0.53	+0.4
1,842,427	+		PFLU_RS08235	0.57	+2.4
1,842,427	+		PFLU_RS08235	0.57	+1.6
1,842,428	-		PFLU_RS08235	0.58	-0.1
1,842,428	-		PFLU_RS08235	0.58	-0.1
1,842,457	+		PFLU_RS08235	0.63	-3.3
1,842,467	+		PFLU_RS08235	0.65	+0.5
1,842,467	+		PFLU_RS08235	0.65	+2.3
1,842,468	-		PFLU_RS08235	0.65	+1.7
1,842,468	-		PFLU_RS08235	0.65	+2.4
1,842,468	-		PFLU_RS08235	0.65	+0.9
1,842,468	-		PFLU_RS08235	0.65	+0.7
1,842,468	-		PFLU_RS08235	0.65	+0.8
1,842,468	-		PFLU_RS08235	0.65	-1.9
1,842,468	-		PFLU_RS08235	0.65	-1.1
1,842,517	-		PFLU_RS08235	0.74	-2.1
1,842,639	-				-1.9
1,842,639	-				-1.6
1,842,657	+				+2.6
1,842,658	-				+0.9
1,842,658	-				+3.3
1,842,658	-				+1.1
1,842,658	-				-0.7
1,842,658	-				-0.2
1,842,760	+				-2.3
1,842,760	+				-2.7
1,842,760	+				-1.9
1,842,760	+				-2.0
1,842,760	+				-2.9
1,842,761	-				+0.0
1,842,761	-				+1.2
1,842,888	+				-0.9
1,842,888	+				-0.7
1,842,888	+				+0.6
1,842,888	+				-0.7
1,842,889	-				-0.8
1,842,889	-				-1.8
1,842,889	-				-0.3
1,842,889	-				-2.5
1,842,889	-				+2.0
1,842,889	-				-0.9
1,842,889	-				+0.3
1,842,889	-				-0.7
1,843,027	-				+1.5
1,843,242	-		PFLU_RS08240	0.17	+2.3
1,843,362	+		PFLU_RS08240	0.22	-0.4
1,843,362	+		PFLU_RS08240	0.22	-1.8
1,843,362	+		PFLU_RS08240	0.22	+0.9
1,843,362	+		PFLU_RS08240	0.22	-1.2
1,843,363	-		PFLU_RS08240	0.22	+0.9
1,843,363	-		PFLU_RS08240	0.22	+0.2
1,843,363	-		PFLU_RS08240	0.22	-0.2
1,843,363	-		PFLU_RS08240	0.22	-3.1
1,843,363	-		PFLU_RS08240	0.22	+0.4
1,843,363	-		PFLU_RS08240	0.22	-0.8
1,843,363	-		PFLU_RS08240	0.22	-0.7
1,843,363	-		PFLU_RS08240	0.22	+2.3
1,843,363	-		PFLU_RS08240	0.22	-2.7
1,843,363	-		PFLU_RS08240	0.22	-2.1
1,843,663	+		PFLU_RS08240	0.33	-0.7
1,843,950	+		PFLU_RS08240	0.44	+0.1
1,843,951	-		PFLU_RS08240	0.44	-2.5
1,844,027	+		PFLU_RS08240	0.47	-3.2
1,844,028	-		PFLU_RS08240	0.47	+1.6
1,844,028	-		PFLU_RS08240	0.47	-2.9
1,844,053	+		PFLU_RS08240	0.48	-1.8
1,844,121	+		PFLU_RS08240	0.50	-1.4
1,844,121	+		PFLU_RS08240	0.50	+1.3
1,844,121	+		PFLU_RS08240	0.50	+1.7
1,844,121	+		PFLU_RS08240	0.50	-0.9
1,844,121	+		PFLU_RS08240	0.50	+0.3
1,844,121	+		PFLU_RS08240	0.50	+0.0
1,844,121	+		PFLU_RS08240	0.50	-2.9
1,844,122	-		PFLU_RS08240	0.50	-0.3
1,844,122	-		PFLU_RS08240	0.50	-0.3
1,844,122	-		PFLU_RS08240	0.50	+0.1
1,844,122	-		PFLU_RS08240	0.50	-1.2
1,844,135	+		PFLU_RS08240	0.51	-0.5
1,844,898	+		PFLU_RS08240	0.80	-3.3
1,844,898	+		PFLU_RS08240	0.80	-2.3
1,844,898	+		PFLU_RS08240	0.80	+3.3
1,844,898	+		PFLU_RS08240	0.80	+0.3
1,844,898	+		PFLU_RS08240	0.80	+0.4
1,844,898	+		PFLU_RS08240	0.80	-1.7
1,844,898	+		PFLU_RS08240	0.80	+0.3
1,844,898	+		PFLU_RS08240	0.80	+0.2
1,844,899	-		PFLU_RS08240	0.80	+3.9
1,844,899	-		PFLU_RS08240	0.80	+2.0
1,844,899	-		PFLU_RS08240	0.80	-0.2
1,844,899	-		PFLU_RS08240	0.80	-1.9
1,844,899	-		PFLU_RS08240	0.80	+2.2
1,844,899	-		PFLU_RS08240	0.80	-2.7
1,844,899	-		PFLU_RS08240	0.80	+1.4
1,844,899	-		PFLU_RS08240	0.80	-1.9
1,844,899	-		PFLU_RS08240	0.80	-3.2
1,844,899	-		PFLU_RS08240	0.80	+2.3
1,844,899	-		PFLU_RS08240	0.80	-2.9
1,844,899	-		PFLU_RS08240	0.80	+0.6
1,844,900	+		PFLU_RS08240	0.80	-0.5
1,844,901	-		PFLU_RS08240	0.80	-0.4
1,844,979	-		PFLU_RS08240	0.83	-0.2
1,845,013	+		PFLU_RS08240	0.84	-2.7
1,845,066	+		PFLU_RS08240	0.86	-3.3
1,845,066	+		PFLU_RS08240	0.86	-2.6
1,845,066	+		PFLU_RS08240	0.86	-1.1
1,845,066	+		PFLU_RS08240	0.86	+0.8
1,845,066	+		PFLU_RS08240	0.86	-1.2
1,845,066	+		PFLU_RS08240	0.86	-3.3
1,845,066	+		PFLU_RS08240	0.86	-2.2
1,845,066	+		PFLU_RS08240	0.86	-2.3
1,845,066	+		PFLU_RS08240	0.86	-2.8
1,845,066	+		PFLU_RS08240	0.86	-3.0
1,845,066	+		PFLU_RS08240	0.86	-1.7
1,845,066	+		PFLU_RS08240	0.86	-1.5
1,845,066	+		PFLU_RS08240	0.86	-3.7
1,845,066	+		PFLU_RS08240	0.86	-2.3
1,845,066	+		PFLU_RS08240	0.86	+0.7
1,845,066	+		PFLU_RS08240	0.86	-0.3
1,845,066	+		PFLU_RS08240	0.86	-3.6
1,845,066	+		PFLU_RS08240	0.86	-2.4
1,845,066	+		PFLU_RS08240	0.86	-3.4
1,845,066	+		PFLU_RS08240	0.86	-2.9
1,845,066	+		PFLU_RS08240	0.86	-3.5
1,845,066	+		PFLU_RS08240	0.86	-2.5
1,845,066	+		PFLU_RS08240	0.86	-0.9
1,845,066	+		PFLU_RS08240	0.86	-3.0
1,845,066	+		PFLU_RS08240	0.86	-1.7
1,845,066	+		PFLU_RS08240	0.86	-3.4
1,845,067	-		PFLU_RS08240	0.86	+0.9
1,845,067	-		PFLU_RS08240	0.86	-1.3
1,845,067	-		PFLU_RS08240	0.86	+0.1
1,845,067	-		PFLU_RS08240	0.86	-1.7
1,845,067	-		PFLU_RS08240	0.86	-2.8
1,845,067	-		PFLU_RS08240	0.86	-0.1
1,845,067	-		PFLU_RS08240	0.86	-1.1
1,845,067	-		PFLU_RS08240	0.86	+0.5
1,845,067	-		PFLU_RS08240	0.86	-1.1
1,845,067	-		PFLU_RS08240	0.86	+0.4
1,845,067	-		PFLU_RS08240	0.86	-0.3
1,845,067	-		PFLU_RS08240	0.86	-1.1
1,845,067	-		PFLU_RS08240	0.86	-2.9
1,845,067	-		PFLU_RS08240	0.86	+0.7
1,845,067	-		PFLU_RS08240	0.86	-0.3
1,845,067	-		PFLU_RS08240	0.86	-2.0
1,845,067	-		PFLU_RS08240	0.86	-2.3
1,845,252	+				-0.6
1,845,252	+				-2.7
1,845,252	+				-3.0
1,845,252	+				-3.1
1,845,252	+				-2.4
1,845,253	-				-0.4
1,845,253	-				-2.3
1,845,253	-				-3.1
1,845,253	-				+0.4
1,845,253	-				-2.4
1,845,253	-				-3.2
1,845,253	-				-2.4
1,845,253	-				-2.3
1,845,253	-				-1.1
1,845,341	+				-3.9
1,845,342	-				+1.3
1,845,342	-				-1.1
1,845,342	-				-1.3
1,845,437	+				+0.6
1,845,437	+				+0.0
1,845,437	+				+1.3
1,845,437	+				+0.2
1,845,437	+				-0.1
1,845,437	+				+2.0
1,845,438	-				+1.0
1,845,438	-				-1.1
1,845,438	-				-0.3
1,845,438	-				+0.0
1,845,438	-				+1.8
1,845,556	+		PFLU_RS08245	0.12	+1.8
1,845,557	-		PFLU_RS08245	0.12	+0.2
1,845,557	-		PFLU_RS08245	0.12	+0.0
1,845,557	-		PFLU_RS08245	0.12	-0.2
1,845,557	-		PFLU_RS08245	0.12	+0.1
1,845,772	+		PFLU_RS08245	0.43	+0.5
1,845,772	+		PFLU_RS08245	0.43	+2.0
1,845,772	+		PFLU_RS08245	0.43	+2.2
1,845,772	+		PFLU_RS08245	0.43	-0.5
1,845,772	+		PFLU_RS08245	0.43	-1.5
1,845,772	+		PFLU_RS08245	0.43	-1.1
1,845,772	+		PFLU_RS08245	0.43	-2.5
1,845,772	+		PFLU_RS08245	0.43	-0.9
1,845,772	+		PFLU_RS08245	0.43	+1.4
1,845,772	+		PFLU_RS08245	0.43	-3.7
1,845,772	+		PFLU_RS08245	0.43	+1.1
1,845,772	+		PFLU_RS08245	0.43	-3.6
1,845,772	+		PFLU_RS08245	0.43	-3.3
1,845,772	+		PFLU_RS08245	0.43	-1.2
1,845,772	+		PFLU_RS08245	0.43	+2.9
1,845,772	+		PFLU_RS08245	0.43	+1.4
1,845,772	+		PFLU_RS08245	0.43	+1.7
1,845,772	+		PFLU_RS08245	0.43	-2.1
1,845,772	+		PFLU_RS08245	0.43	-2.4
1,845,772	+		PFLU_RS08245	0.43	-2.3
1,845,772	+		PFLU_RS08245	0.43	-2.7
1,845,773	-		PFLU_RS08245	0.44	+2.3
1,845,773	-		PFLU_RS08245	0.44	+1.1
1,845,773	-		PFLU_RS08245	0.44	+2.1
1,845,773	-		PFLU_RS08245	0.44	+0.2
1,845,773	-		PFLU_RS08245	0.44	-2.1
1,845,773	-		PFLU_RS08245	0.44	+0.0
1,845,773	-		PFLU_RS08245	0.44	+0.6
1,845,773	-		PFLU_RS08245	0.44	-0.2
1,845,773	-		PFLU_RS08245	0.44	-0.3
1,845,773	-		PFLU_RS08245	0.44	-1.0
1,845,773	-		PFLU_RS08245	0.44	+0.5
1,845,773	-		PFLU_RS08245	0.44	-1.4
1,845,773	-		PFLU_RS08245	0.44	+1.4
1,845,773	-		PFLU_RS08245	0.44	+0.6
1,845,773	-		PFLU_RS08245	0.44	-1.8
1,845,773	-		PFLU_RS08245	0.44	-1.6
1,845,773	-		PFLU_RS08245	0.44	-1.6
1,845,773	-		PFLU_RS08245	0.44	+1.3
1,845,773	-		PFLU_RS08245	0.44	+3.2
1,845,773	-		PFLU_RS08245	0.44	-0.2
1,845,773	-		PFLU_RS08245	0.44	-0.4
1,845,773	-		PFLU_RS08245	0.44	-3.4
1,845,773	-		PFLU_RS08245	0.44	+0.2
1,845,949	+		PFLU_RS08245	0.69	+1.6
1,845,949	+		PFLU_RS08245	0.69	-0.7
1,845,950	-		PFLU_RS08245	0.69	-2.2
1,845,950	-		PFLU_RS08245	0.69	+0.8
1,845,950	-		PFLU_RS08245	0.69	-1.1
1,846,007	+		PFLU_RS08245	0.78	-2.6
1,846,007	+		PFLU_RS08245	0.78	+1.1
1,846,007	+		PFLU_RS08245	0.78	+1.2
1,846,007	+		PFLU_RS08245	0.78	-1.0
1,846,007	+		PFLU_RS08245	0.78	+0.4
1,846,007	+		PFLU_RS08245	0.78	+1.0
1,846,007	+		PFLU_RS08245	0.78	+1.6
1,846,008	-		PFLU_RS08245	0.78	+0.3
1,846,008	-		PFLU_RS08245	0.78	-2.4
1,846,017	+		PFLU_RS08245	0.79	-3.1
1,846,018	-		PFLU_RS08245	0.79	+0.3
1,846,018	-		PFLU_RS08245	0.79	+0.3
1,846,018	-		PFLU_RS08245	0.79	+2.9
1,846,018	-		PFLU_RS08245	0.79	-0.4
1,846,051	+		PFLU_RS08245	0.84	+1.0
1,846,051	+		PFLU_RS08245	0.84	-2.8
1,846,051	+		PFLU_RS08245	0.84	-2.4
1,846,051	+		PFLU_RS08245	0.84	+0.6
1,846,051	+		PFLU_RS08245	0.84	+1.1
1,846,051	+		PFLU_RS08245	0.84	+1.1
1,846,051	+		PFLU_RS08245	0.84	-2.1
1,846,051	+		PFLU_RS08245	0.84	-2.2
1,846,052	-		PFLU_RS08245	0.84	+1.3
1,846,052	-		PFLU_RS08245	0.84	-2.1
1,846,052	-		PFLU_RS08245	0.84	-0.2
1,846,052	-		PFLU_RS08245	0.84	-0.3
1,846,052	-		PFLU_RS08245	0.84	+1.1
1,846,052	-		PFLU_RS08245	0.84	-1.9
1,846,052	-		PFLU_RS08245	0.84	-1.0
1,846,052	-		PFLU_RS08245	0.84	+0.5
1,846,052	-		PFLU_RS08245	0.84	+1.2
1,846,117	-				+0.6
1,846,117	-				-2.4
1,846,151	+				+0.7
1,846,159	+				-0.7
1,846,160	-				+2.3
1,846,228	+				+0.0
1,846,229	-				-0.2
1,846,288	+				+1.9
1,846,288	+				+1.0
1,846,288	+				-2.0
1,846,288	+				-0.4
1,846,288	+				-2.6
1,846,288	+				+1.4
1,846,288	+				+0.6
1,846,288	+				+0.8
1,846,289	-				-1.2
1,846,289	-				+0.7
1,846,289	-				+0.5
1,846,360	+		PFLU_RS08250	0.15	-2.6
1,846,361	-		PFLU_RS08250	0.15	+0.7
1,846,361	-		PFLU_RS08250	0.15	-0.8
1,846,361	-		PFLU_RS08250	0.15	+0.1
1,846,361	-		PFLU_RS08250	0.15	-1.2