Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13665

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13660 and BBR_RS13665 overlap by 20 nucleotidesBBR_RS13665 and BBR_RS13670 are separated by 166 nucleotides BBR_RS13660: BBR_RS13660 - GTP-binding protein, at 837,577 to 839,763 _RS13660 BBR_RS13665: BBR_RS13665 - phospholipase/carboxylesterase, at 839,744 to 840,394 _RS13665 BBR_RS13670: BBR_RS13670 - hypothetical protein, at 840,561 to 841,793 _RS13670 Position (kb) 839 840 841Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 838.829 kb on + strand, within BBR_RS13660at 838.829 kb on + strand, within BBR_RS13660at 838.843 kb on + strand, within BBR_RS13660at 838.863 kb on + strand, within BBR_RS13660at 838.934 kb on + strand, within BBR_RS13660at 838.934 kb on + strand, within BBR_RS13660at 838.942 kb on - strand, within BBR_RS13660at 839.001 kb on + strand, within BBR_RS13660at 839.036 kb on + strand, within BBR_RS13660at 839.065 kb on - strand, within BBR_RS13660at 839.183 kb on + strand, within BBR_RS13660at 839.183 kb on + strand, within BBR_RS13660at 839.189 kb on + strand, within BBR_RS13660at 839.268 kb on + strand, within BBR_RS13660at 839.310 kb on - strand, within BBR_RS13660at 839.328 kb on - strand, within BBR_RS13660at 839.336 kb on - strand, within BBR_RS13660at 839.341 kb on + strand, within BBR_RS13660at 839.344 kb on - strand, within BBR_RS13660at 839.384 kb on + strand, within BBR_RS13660at 839.392 kb on - strand, within BBR_RS13660at 839.474 kb on + strand, within BBR_RS13660at 839.484 kb on + strand, within BBR_RS13660at 839.484 kb on + strand, within BBR_RS13660at 839.512 kb on - strand, within BBR_RS13660at 839.590 kb on - strandat 839.605 kb on + strandat 839.649 kb on + strandat 839.649 kb on + strandat 839.684 kb on + strandat 839.692 kb on - strandat 839.705 kb on + strandat 839.714 kb on - strandat 839.714 kb on - strandat 839.816 kb on - strand, within BBR_RS13665at 839.853 kb on + strand, within BBR_RS13665at 839.877 kb on + strand, within BBR_RS13665at 839.877 kb on + strand, within BBR_RS13665at 839.898 kb on + strand, within BBR_RS13665at 839.898 kb on + strand, within BBR_RS13665at 839.939 kb on - strand, within BBR_RS13665at 839.955 kb on + strand, within BBR_RS13665at 839.974 kb on + strand, within BBR_RS13665at 839.987 kb on - strand, within BBR_RS13665at 839.997 kb on - strand, within BBR_RS13665at 840.008 kb on + strand, within BBR_RS13665at 840.008 kb on + strand, within BBR_RS13665at 840.008 kb on + strand, within BBR_RS13665at 840.008 kb on + strand, within BBR_RS13665at 840.016 kb on - strand, within BBR_RS13665at 840.021 kb on + strand, within BBR_RS13665at 840.023 kb on + strand, within BBR_RS13665at 840.046 kb on + strand, within BBR_RS13665at 840.046 kb on + strand, within BBR_RS13665at 840.054 kb on - strand, within BBR_RS13665at 840.054 kb on - strand, within BBR_RS13665at 840.054 kb on - strand, within BBR_RS13665at 840.058 kb on + strand, within BBR_RS13665at 840.071 kb on - strand, within BBR_RS13665at 840.084 kb on + strand, within BBR_RS13665at 840.287 kb on - strand, within BBR_RS13665at 840.335 kb on + strandat 840.353 kb on - strandat 840.362 kb on + strandat 840.371 kb on + strandat 840.371 kb on + strandat 840.379 kb on - strandat 840.379 kb on - strandat 840.379 kb on - strandat 840.379 kb on - strandat 840.386 kb on + strandat 840.405 kb on - strandat 840.410 kb on - strandat 840.463 kb on - strandat 840.543 kb on + strandat 840.569 kb on + strandat 840.569 kb on + strandat 840.582 kb on - strandat 840.594 kb on + strandat 840.614 kb on + strandat 840.680 kb on + strandat 840.692 kb on - strand, within BBR_RS13670at 840.778 kb on + strand, within BBR_RS13670at 840.786 kb on - strand, within BBR_RS13670at 840.786 kb on - strand, within BBR_RS13670at 840.799 kb on + strand, within BBR_RS13670at 840.937 kb on - strand, within BBR_RS13670at 840.937 kb on - strand, within BBR_RS13670at 841.001 kb on + strand, within BBR_RS13670at 841.008 kb on + strand, within BBR_RS13670at 841.008 kb on + strand, within BBR_RS13670at 841.025 kb on + strand, within BBR_RS13670at 841.031 kb on + strand, within BBR_RS13670at 841.033 kb on - strand, within BBR_RS13670at 841.094 kb on + strand, within BBR_RS13670at 841.097 kb on - strand, within BBR_RS13670at 841.155 kb on - strand, within BBR_RS13670at 841.179 kb on + strand, within BBR_RS13670at 841.208 kb on - strand, within BBR_RS13670at 841.246 kb on - strand, within BBR_RS13670at 841.248 kb on + strand, within BBR_RS13670at 841.251 kb on - strand, within BBR_RS13670at 841.251 kb on - strand, within BBR_RS13670at 841.256 kb on - strand, within BBR_RS13670at 841.261 kb on - strand, within BBR_RS13670at 841.282 kb on - strand, within BBR_RS13670at 841.294 kb on - strand, within BBR_RS13670at 841.294 kb on - strand, within BBR_RS13670at 841.344 kb on - strand, within BBR_RS13670at 841.351 kb on - strand, within BBR_RS13670at 841.371 kb on + strand, within BBR_RS13670at 841.371 kb on + strand, within BBR_RS13670at 841.386 kb on + strand, within BBR_RS13670at 841.388 kb on + strand, within BBR_RS13670

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1
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838,829 + BBR_RS13660 0.57 -0.5
838,829 + BBR_RS13660 0.57 -1.2
838,843 + BBR_RS13660 0.58 -1.9
838,863 + BBR_RS13660 0.59 -2.2
838,934 + BBR_RS13660 0.62 -1.8
838,934 + BBR_RS13660 0.62 -0.3
838,942 - BBR_RS13660 0.62 +0.6
839,001 + BBR_RS13660 0.65 -2.0
839,036 + BBR_RS13660 0.67 +0.3
839,065 - BBR_RS13660 0.68 -0.1
839,183 + BBR_RS13660 0.73 +1.8
839,183 + BBR_RS13660 0.73 +0.8
839,189 + BBR_RS13660 0.74 -2.3
839,268 + BBR_RS13660 0.77 +2.0
839,310 - BBR_RS13660 0.79 +1.7
839,328 - BBR_RS13660 0.80 +0.8
839,336 - BBR_RS13660 0.80 +1.5
839,341 + BBR_RS13660 0.81 -0.9
839,344 - BBR_RS13660 0.81 -0.3
839,384 + BBR_RS13660 0.83 -1.5
839,392 - BBR_RS13660 0.83 -0.1
839,474 + BBR_RS13660 0.87 +0.8
839,484 + BBR_RS13660 0.87 +2.6
839,484 + BBR_RS13660 0.87 -2.8
839,512 - BBR_RS13660 0.88 +0.2
839,590 - -1.6
839,605 + +1.1
839,649 + +0.2
839,649 + -2.1
839,684 + -0.3
839,692 - +1.0
839,705 + +0.2
839,714 - -1.9
839,714 - +1.4
839,816 - BBR_RS13665 0.11 +1.2
839,853 + BBR_RS13665 0.17 +1.0
839,877 + BBR_RS13665 0.20 +3.2
839,877 + BBR_RS13665 0.20 +0.8
839,898 + BBR_RS13665 0.24 -2.0
839,898 + BBR_RS13665 0.24 +1.7
839,939 - BBR_RS13665 0.30 -2.1
839,955 + BBR_RS13665 0.32 +0.8
839,974 + BBR_RS13665 0.35 +1.6
839,987 - BBR_RS13665 0.37 +0.2
839,997 - BBR_RS13665 0.39 +1.0
840,008 + BBR_RS13665 0.41 +1.7
840,008 + BBR_RS13665 0.41 -0.4
840,008 + BBR_RS13665 0.41 +2.0
840,008 + BBR_RS13665 0.41 +1.7
840,016 - BBR_RS13665 0.42 +1.6
840,021 + BBR_RS13665 0.43 +2.2
840,023 + BBR_RS13665 0.43 +0.3
840,046 + BBR_RS13665 0.46 -1.4
840,046 + BBR_RS13665 0.46 -2.6
840,054 - BBR_RS13665 0.48 -0.6
840,054 - BBR_RS13665 0.48 +0.1
840,054 - BBR_RS13665 0.48 +0.7
840,058 + BBR_RS13665 0.48 -1.8
840,071 - BBR_RS13665 0.50 +1.0
840,084 + BBR_RS13665 0.52 +0.1
840,287 - BBR_RS13665 0.83 +0.6
840,335 + +2.8
840,353 - -1.9
840,362 + +0.4
840,371 + -2.1
840,371 + +2.0
840,379 - +1.3
840,379 - -0.1
840,379 - +2.0
840,379 - +2.7
840,386 + +1.4
840,405 - -0.6
840,410 - -0.0
840,463 - +2.1
840,543 + +1.2
840,569 + +2.0
840,569 + -3.1
840,582 - +0.6
840,594 + -0.2
840,614 + -2.0
840,680 + +2.6
840,692 - BBR_RS13670 0.11 +1.3
840,778 + BBR_RS13670 0.18 +0.6
840,786 - BBR_RS13670 0.18 +3.3
840,786 - BBR_RS13670 0.18 +1.8
840,799 + BBR_RS13670 0.19 +0.5
840,937 - BBR_RS13670 0.30 -2.1
840,937 - BBR_RS13670 0.30 -3.3
841,001 + BBR_RS13670 0.36 -2.1
841,008 + BBR_RS13670 0.36 -3.0
841,008 + BBR_RS13670 0.36 -2.9
841,025 + BBR_RS13670 0.38 +1.4
841,031 + BBR_RS13670 0.38 -1.8
841,033 - BBR_RS13670 0.38 -0.4
841,094 + BBR_RS13670 0.43 -3.3
841,097 - BBR_RS13670 0.43 +1.5
841,155 - BBR_RS13670 0.48 +0.4
841,179 + BBR_RS13670 0.50 -2.5
841,208 - BBR_RS13670 0.52 +0.9
841,246 - BBR_RS13670 0.56 -2.2
841,248 + BBR_RS13670 0.56 +0.6
841,251 - BBR_RS13670 0.56 -0.6
841,251 - BBR_RS13670 0.56 +2.3
841,256 - BBR_RS13670 0.56 +1.2
841,261 - BBR_RS13670 0.57 +1.8
841,282 - BBR_RS13670 0.58 -0.7
841,294 - BBR_RS13670 0.59 +0.7
841,294 - BBR_RS13670 0.59 +0.8
841,344 - BBR_RS13670 0.64 +1.0
841,351 - BBR_RS13670 0.64 -1.5
841,371 + BBR_RS13670 0.66 +1.0
841,371 + BBR_RS13670 0.66 -0.6
841,386 + BBR_RS13670 0.67 -3.2
841,388 + BBR_RS13670 0.67 -0.4

Or see this region's nucleotide sequence