Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13635

Experiment: diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13630 and BBR_RS13635 are separated by 1 nucleotidesBBR_RS13635 and BBR_RS13640 overlap by 1 nucleotidesBBR_RS13640 and BBR_RS13645 are separated by 36 nucleotides BBR_RS13630: BBR_RS13630 - carbamoyl-phosphate synthase small subunit, at 829,917 to 831,140 _RS13630 BBR_RS13635: BBR_RS13635 - carbamoyl-phosphate synthase large subunit, at 831,142 to 834,525 _RS13635 BBR_RS13640: BBR_RS13640 - orotidine-5'-phosphate decarboxylase, at 834,525 to 835,445 _RS13640 BBR_RS13645: BBR_RS13645 - guanylate kinase, at 835,482 to 836,072 _RS13645 Position (kb) 831 832 833 834 835Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 830.165 kb on + strand, within BBR_RS13630at 830.180 kb on + strand, within BBR_RS13630at 830.194 kb on + strand, within BBR_RS13630at 830.334 kb on + strand, within BBR_RS13630at 830.393 kb on + strand, within BBR_RS13630at 830.393 kb on + strand, within BBR_RS13630at 830.401 kb on - strand, within BBR_RS13630at 830.448 kb on + strand, within BBR_RS13630at 830.449 kb on + strand, within BBR_RS13630at 830.449 kb on + strand, within BBR_RS13630at 830.483 kb on + strand, within BBR_RS13630at 830.491 kb on + strand, within BBR_RS13630at 830.493 kb on + strand, within BBR_RS13630at 830.687 kb on - strand, within BBR_RS13630at 830.751 kb on + strand, within BBR_RS13630at 830.871 kb on + strand, within BBR_RS13630at 830.871 kb on + strand, within BBR_RS13630at 830.879 kb on - strand, within BBR_RS13630at 830.879 kb on - strand, within BBR_RS13630at 831.006 kb on + strand, within BBR_RS13630at 831.014 kb on - strand, within BBR_RS13630at 831.016 kb on + strand, within BBR_RS13630at 831.097 kb on - strandat 831.114 kb on + strandat 831.140 kb on - strandat 831.300 kb on + strandat 831.420 kb on + strandat 831.497 kb on + strand, within BBR_RS13635at 831.532 kb on - strand, within BBR_RS13635at 831.593 kb on + strand, within BBR_RS13635at 831.593 kb on + strand, within BBR_RS13635at 831.601 kb on - strand, within BBR_RS13635at 831.601 kb on - strand, within BBR_RS13635at 831.601 kb on - strand, within BBR_RS13635at 831.601 kb on - strand, within BBR_RS13635at 831.601 kb on - strand, within BBR_RS13635at 831.899 kb on + strand, within BBR_RS13635at 831.922 kb on + strand, within BBR_RS13635at 832.008 kb on + strand, within BBR_RS13635at 832.045 kb on - strand, within BBR_RS13635at 832.164 kb on + strand, within BBR_RS13635at 832.255 kb on + strand, within BBR_RS13635at 832.340 kb on + strand, within BBR_RS13635at 832.348 kb on - strand, within BBR_RS13635at 832.410 kb on + strand, within BBR_RS13635at 832.447 kb on + strand, within BBR_RS13635at 832.452 kb on + strand, within BBR_RS13635at 832.555 kb on + strand, within BBR_RS13635at 832.716 kb on + strand, within BBR_RS13635at 832.734 kb on - strand, within BBR_RS13635at 832.769 kb on + strand, within BBR_RS13635at 832.863 kb on - strand, within BBR_RS13635at 832.863 kb on - strand, within BBR_RS13635at 832.863 kb on - strand, within BBR_RS13635at 832.941 kb on + strand, within BBR_RS13635at 832.941 kb on + strand, within BBR_RS13635at 832.970 kb on + strand, within BBR_RS13635at 833.133 kb on + strand, within BBR_RS13635at 833.150 kb on + strand, within BBR_RS13635at 833.218 kb on + strand, within BBR_RS13635at 833.230 kb on + strand, within BBR_RS13635at 833.230 kb on + strand, within BBR_RS13635at 833.233 kb on - strand, within BBR_RS13635at 833.379 kb on + strand, within BBR_RS13635at 833.488 kb on + strand, within BBR_RS13635at 833.512 kb on - strand, within BBR_RS13635at 833.552 kb on + strand, within BBR_RS13635at 833.597 kb on - strand, within BBR_RS13635at 833.610 kb on + strand, within BBR_RS13635at 833.649 kb on + strand, within BBR_RS13635at 833.656 kb on + strand, within BBR_RS13635at 833.717 kb on + strand, within BBR_RS13635at 833.717 kb on + strand, within BBR_RS13635at 833.832 kb on + strand, within BBR_RS13635at 833.833 kb on + strand, within BBR_RS13635at 833.892 kb on + strand, within BBR_RS13635at 833.937 kb on + strand, within BBR_RS13635at 833.942 kb on + strand, within BBR_RS13635at 833.974 kb on + strand, within BBR_RS13635at 833.975 kb on - strand, within BBR_RS13635at 834.110 kb on + strand, within BBR_RS13635at 834.125 kb on + strand, within BBR_RS13635at 834.219 kb on - strandat 834.450 kb on + strandat 834.519 kb on + strandat 834.657 kb on + strand, within BBR_RS13640at 834.679 kb on + strand, within BBR_RS13640at 834.679 kb on + strand, within BBR_RS13640at 834.679 kb on + strand, within BBR_RS13640at 834.786 kb on + strand, within BBR_RS13640at 834.800 kb on + strand, within BBR_RS13640at 834.800 kb on + strand, within BBR_RS13640at 834.800 kb on + strand, within BBR_RS13640at 834.813 kb on + strand, within BBR_RS13640at 834.815 kb on + strand, within BBR_RS13640at 834.822 kb on + strand, within BBR_RS13640at 834.834 kb on + strand, within BBR_RS13640at 834.893 kb on + strand, within BBR_RS13640at 834.893 kb on + strand, within BBR_RS13640at 835.021 kb on + strand, within BBR_RS13640at 835.036 kb on + strand, within BBR_RS13640at 835.121 kb on + strand, within BBR_RS13640at 835.141 kb on + strand, within BBR_RS13640at 835.156 kb on + strand, within BBR_RS13640at 835.174 kb on + strand, within BBR_RS13640at 835.200 kb on + strand, within BBR_RS13640at 835.281 kb on + strand, within BBR_RS13640at 835.448 kb on - strandat 835.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction diet=HighFatHighSugar; sample=FecalPellet; mouse13; day1
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830,165 + BBR_RS13630 0.20 -0.4
830,180 + BBR_RS13630 0.21 +0.0
830,194 + BBR_RS13630 0.23 +1.1
830,334 + BBR_RS13630 0.34 +1.6
830,393 + BBR_RS13630 0.39 -0.2
830,393 + BBR_RS13630 0.39 +0.5
830,401 - BBR_RS13630 0.40 -0.4
830,448 + BBR_RS13630 0.43 -0.1
830,449 + BBR_RS13630 0.43 +0.8
830,449 + BBR_RS13630 0.43 -0.1
830,483 + BBR_RS13630 0.46 +1.1
830,491 + BBR_RS13630 0.47 -0.9
830,493 + BBR_RS13630 0.47 +1.2
830,687 - BBR_RS13630 0.63 +0.8
830,751 + BBR_RS13630 0.68 -0.9
830,871 + BBR_RS13630 0.78 +1.5
830,871 + BBR_RS13630 0.78 +1.0
830,879 - BBR_RS13630 0.79 -0.8
830,879 - BBR_RS13630 0.79 -0.5
831,006 + BBR_RS13630 0.89 +0.7
831,014 - BBR_RS13630 0.90 -0.4
831,016 + BBR_RS13630 0.90 -1.5
831,097 - -0.5
831,114 + -2.4
831,140 - +0.0
831,300 + -1.0
831,420 + +0.8
831,497 + BBR_RS13635 0.10 +2.2
831,532 - BBR_RS13635 0.12 -0.2
831,593 + BBR_RS13635 0.13 +0.5
831,593 + BBR_RS13635 0.13 +0.2
831,601 - BBR_RS13635 0.14 -0.1
831,601 - BBR_RS13635 0.14 -0.5
831,601 - BBR_RS13635 0.14 +0.6
831,601 - BBR_RS13635 0.14 -0.6
831,601 - BBR_RS13635 0.14 +0.8
831,899 + BBR_RS13635 0.22 +1.5
831,922 + BBR_RS13635 0.23 +0.7
832,008 + BBR_RS13635 0.26 +1.2
832,045 - BBR_RS13635 0.27 +0.2
832,164 + BBR_RS13635 0.30 -1.2
832,255 + BBR_RS13635 0.33 +0.0
832,340 + BBR_RS13635 0.35 +0.3
832,348 - BBR_RS13635 0.36 +1.1
832,410 + BBR_RS13635 0.37 +0.1
832,447 + BBR_RS13635 0.39 -0.5
832,452 + BBR_RS13635 0.39 +0.2
832,555 + BBR_RS13635 0.42 +0.8
832,716 + BBR_RS13635 0.47 -0.1
832,734 - BBR_RS13635 0.47 +1.2
832,769 + BBR_RS13635 0.48 +1.0
832,863 - BBR_RS13635 0.51 +0.8
832,863 - BBR_RS13635 0.51 -0.8
832,863 - BBR_RS13635 0.51 -0.2
832,941 + BBR_RS13635 0.53 +1.9
832,941 + BBR_RS13635 0.53 -0.7
832,970 + BBR_RS13635 0.54 +0.1
833,133 + BBR_RS13635 0.59 -0.3
833,150 + BBR_RS13635 0.59 +0.8
833,218 + BBR_RS13635 0.61 +0.1
833,230 + BBR_RS13635 0.62 +1.3
833,230 + BBR_RS13635 0.62 -0.5
833,233 - BBR_RS13635 0.62 +1.0
833,379 + BBR_RS13635 0.66 +3.1
833,488 + BBR_RS13635 0.69 -1.0
833,512 - BBR_RS13635 0.70 -0.2
833,552 + BBR_RS13635 0.71 +0.6
833,597 - BBR_RS13635 0.73 -0.6
833,610 + BBR_RS13635 0.73 +0.4
833,649 + BBR_RS13635 0.74 -0.2
833,656 + BBR_RS13635 0.74 +0.1
833,717 + BBR_RS13635 0.76 +1.7
833,717 + BBR_RS13635 0.76 +1.2
833,832 + BBR_RS13635 0.79 +0.4
833,833 + BBR_RS13635 0.80 +0.6
833,892 + BBR_RS13635 0.81 +0.9
833,937 + BBR_RS13635 0.83 -0.5
833,942 + BBR_RS13635 0.83 -0.1
833,974 + BBR_RS13635 0.84 +0.9
833,975 - BBR_RS13635 0.84 +0.9
834,110 + BBR_RS13635 0.88 +1.8
834,125 + BBR_RS13635 0.88 -1.0
834,219 - +1.0
834,450 + +0.2
834,519 + -1.8
834,657 + BBR_RS13640 0.14 +0.8
834,679 + BBR_RS13640 0.17 +0.2
834,679 + BBR_RS13640 0.17 +0.2
834,679 + BBR_RS13640 0.17 -0.1
834,786 + BBR_RS13640 0.28 -0.1
834,800 + BBR_RS13640 0.30 -0.5
834,800 + BBR_RS13640 0.30 -2.1
834,800 + BBR_RS13640 0.30 +0.2
834,813 + BBR_RS13640 0.31 +0.8
834,815 + BBR_RS13640 0.31 -2.7
834,822 + BBR_RS13640 0.32 +0.5
834,834 + BBR_RS13640 0.34 +0.3
834,893 + BBR_RS13640 0.40 -2.0
834,893 + BBR_RS13640 0.40 -1.1
835,021 + BBR_RS13640 0.54 -1.4
835,036 + BBR_RS13640 0.55 -1.4
835,121 + BBR_RS13640 0.65 -1.2
835,141 + BBR_RS13640 0.67 -2.2
835,156 + BBR_RS13640 0.69 +0.8
835,174 + BBR_RS13640 0.70 +1.2
835,200 + BBR_RS13640 0.73 -2.8
835,281 + BBR_RS13640 0.82 -2.3
835,448 - -0.2
835,493 + -0.8

Or see this region's nucleotide sequence