Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2718

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2717 and DvMF_2718 are separated by 524 nucleotidesDvMF_2718 and DvMF_2719 are separated by 396 nucleotides DvMF_2717: DvMF_2717 - GTP-binding protein LepA (RefSeq), at 3,439,993 to 3,441,798 _2717 DvMF_2718: DvMF_2718 - signal peptidase I (RefSeq), at 3,442,323 to 3,442,919 _2718 DvMF_2719: DvMF_2719 - competence protein ComM, putative (RefSeq), at 3,443,316 to 3,444,026 _2719 Position (kb) 3442 3443Strain fitness (log2 ratio) -1 0 1at 3441.401 kb on - strand, within DvMF_2717at 3442.000 kb on + strandat 3442.908 kb on + strandat 3442.916 kb on - strandat 3442.916 kb on - strandat 3443.033 kb on - strandat 3443.122 kb on - strandat 3443.172 kb on + strandat 3443.343 kb on - strandat 3443.350 kb on + strandat 3443.396 kb on + strand, within DvMF_2719at 3443.396 kb on + strand, within DvMF_2719at 3443.485 kb on + strand, within DvMF_2719at 3443.684 kb on + strand, within DvMF_2719at 3443.785 kb on - strand, within DvMF_2719at 3443.882 kb on + strand, within DvMF_2719at 3443.890 kb on - strand, within DvMF_2719

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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3,441,401 - DvMF_2717 0.78 -0.6
3,442,000 + -0.3
3,442,908 + -0.5
3,442,916 - -0.5
3,442,916 - -0.5
3,443,033 - -0.2
3,443,122 - -0.5
3,443,172 + -0.4
3,443,343 - +0.3
3,443,350 + +0.0
3,443,396 + DvMF_2719 0.11 -0.2
3,443,396 + DvMF_2719 0.11 -0.1
3,443,485 + DvMF_2719 0.24 +0.1
3,443,684 + DvMF_2719 0.52 -0.4
3,443,785 - DvMF_2719 0.66 -0.3
3,443,882 + DvMF_2719 0.80 +0.1
3,443,890 - DvMF_2719 0.81 -0.2

Or see this region's nucleotide sequence