Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2584

Experiment: MoYLS4 media with NH4 no edta

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2583 and DvMF_2584 are separated by 3 nucleotidesDvMF_2584 and DvMF_2585 are separated by 447 nucleotidesDvMF_2585 and DvMF_2586 are separated by 46 nucleotides DvMF_2583: DvMF_2583 - dihydroxyacetone kinase, L subunit (RefSeq), at 3,267,361 to 3,267,993 _2583 DvMF_2584: DvMF_2584 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 3,267,997 to 3,270,537 _2584 DvMF_2585: DvMF_2585 - anti-sigma-28 factor, FlgM (RefSeq), at 3,270,985 to 3,271,296 _2585 DvMF_2586: DvMF_2586 - hypothetical protein (RefSeq), at 3,271,343 to 3,271,759 _2586 Position (kb) 3267 3268 3269 3270 3271Strain fitness (log2 ratio) -3 -2 -1 0 1at 3267.001 kb on - strandat 3267.001 kb on - strandat 3267.138 kb on - strandat 3267.501 kb on - strand, within DvMF_2583at 3267.643 kb on - strand, within DvMF_2583at 3267.934 kb on + strandat 3268.211 kb on - strandat 3268.213 kb on + strandat 3268.269 kb on + strand, within DvMF_2584at 3268.349 kb on - strand, within DvMF_2584at 3268.371 kb on - strand, within DvMF_2584at 3268.416 kb on + strand, within DvMF_2584at 3268.597 kb on + strand, within DvMF_2584at 3268.918 kb on - strand, within DvMF_2584at 3269.594 kb on - strand, within DvMF_2584at 3269.714 kb on - strand, within DvMF_2584at 3269.918 kb on + strand, within DvMF_2584at 3270.017 kb on - strand, within DvMF_2584at 3270.204 kb on - strand, within DvMF_2584at 3270.258 kb on + strand, within DvMF_2584at 3270.308 kb on - strandat 3270.444 kb on - strandat 3270.469 kb on - strandat 3270.928 kb on - strandat 3271.141 kb on + strand, within DvMF_2585at 3271.250 kb on - strand, within DvMF_2585at 3271.261 kb on - strand, within DvMF_2585at 3271.341 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
remove
3,267,001 - -0.4
3,267,001 - -0.5
3,267,138 - -0.5
3,267,501 - DvMF_2583 0.22 +0.5
3,267,643 - DvMF_2583 0.45 +0.2
3,267,934 + -3.0
3,268,211 - +0.6
3,268,213 + -0.2
3,268,269 + DvMF_2584 0.11 +0.5
3,268,349 - DvMF_2584 0.14 -1.4
3,268,371 - DvMF_2584 0.15 +0.1
3,268,416 + DvMF_2584 0.16 -0.3
3,268,597 + DvMF_2584 0.24 +0.3
3,268,918 - DvMF_2584 0.36 +0.4
3,269,594 - DvMF_2584 0.63 +0.4
3,269,714 - DvMF_2584 0.68 -0.1
3,269,918 + DvMF_2584 0.76 +0.0
3,270,017 - DvMF_2584 0.79 +0.3
3,270,204 - DvMF_2584 0.87 +0.7
3,270,258 + DvMF_2584 0.89 +0.5
3,270,308 - +0.5
3,270,444 - +0.3
3,270,469 - +0.5
3,270,928 - -0.6
3,271,141 + DvMF_2585 0.50 -1.0
3,271,250 - DvMF_2585 0.85 -1.0
3,271,261 - DvMF_2585 0.88 -0.8
3,271,341 + -0.5

Or see this region's nucleotide sequence