Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2372

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2371 and prfC are separated by 471 nucleotidesprfC and DvMF_2373 are separated by 269 nucleotides DvMF_2371: DvMF_2371 - 3-deoxy-manno-octulosonate cytidylyltransferase (RefSeq), at 2,991,194 to 2,992,006 _2371 DvMF_2372: prfC - peptide chain release factor 3 (RefSeq), at 2,992,478 to 2,994,067 prfC DvMF_2373: DvMF_2373 - multi-sensor hybrid histidine kinase (RefSeq), at 2,994,337 to 2,998,836 _2373 Position (kb) 2992 2993 2994 2995Strain fitness (log2 ratio) -1 0 1at 2992.026 kb on - strandat 2992.655 kb on + strand, within prfCat 2992.957 kb on + strand, within prfCat 2992.976 kb on + strand, within prfCat 2992.981 kb on + strand, within prfCat 2992.984 kb on - strand, within prfCat 2993.425 kb on - strand, within prfCat 2993.543 kb on - strand, within prfCat 2993.632 kb on - strand, within prfCat 2993.758 kb on - strand, within prfCat 2994.087 kb on - strandat 2994.342 kb on - strandat 2994.476 kb on + strandat 2994.694 kb on + strandat 2994.757 kb on + strandat 2994.897 kb on + strand, within DvMF_2373

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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2,992,026 - -0.5
2,992,655 + prfC DvMF_2372 0.11 -0.1
2,992,957 + prfC DvMF_2372 0.30 -0.0
2,992,976 + prfC DvMF_2372 0.31 +0.4
2,992,981 + prfC DvMF_2372 0.32 +0.0
2,992,984 - prfC DvMF_2372 0.32 -0.2
2,993,425 - prfC DvMF_2372 0.60 +0.8
2,993,543 - prfC DvMF_2372 0.67 +0.4
2,993,632 - prfC DvMF_2372 0.73 +0.2
2,993,758 - prfC DvMF_2372 0.81 -0.8
2,994,087 - -0.7
2,994,342 - -0.5
2,994,476 + -1.0
2,994,694 + +0.3
2,994,757 + -0.1
2,994,897 + DvMF_2373 0.12 +0.1

Or see this region's nucleotide sequence