Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2271

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2269 and DvMF_2270 are separated by 18 nucleotidesDvMF_2270 and DvMF_2271 are separated by 128 nucleotidesDvMF_2271 and DvMF_2272 are separated by 325 nucleotides DvMF_2269: DvMF_2269 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,851,219 to 2,853,285 _2269 DvMF_2270: DvMF_2270 - hypothetical protein (RefSeq), at 2,853,304 to 2,853,615 _2270 DvMF_2271: DvMF_2271 - recombination protein RecR (RefSeq), at 2,853,744 to 2,854,349 _2271 DvMF_2272: DvMF_2272 - hypothetical protein (RefSeq), at 2,854,675 to 2,855,430 _2272 Position (kb) 2853 2854 2855Strain fitness (log2 ratio) -1 0 1at 2853.726 kb on + strandat 2853.885 kb on + strand, within DvMF_2271at 2853.947 kb on + strand, within DvMF_2271at 2854.032 kb on - strand, within DvMF_2271at 2854.050 kb on + strand, within DvMF_2271at 2854.164 kb on + strand, within DvMF_2271at 2854.172 kb on - strand, within DvMF_2271at 2854.177 kb on + strand, within DvMF_2271at 2854.262 kb on + strand, within DvMF_2271at 2854.336 kb on + strandat 2854.422 kb on - strandat 2854.451 kb on + strandat 2854.649 kb on - strandat 2854.681 kb on - strandat 2854.747 kb on + strandat 2854.762 kb on - strand, within DvMF_2272at 2854.873 kb on - strand, within DvMF_2272at 2855.006 kb on + strand, within DvMF_2272

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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2,853,726 + +0.1
2,853,885 + DvMF_2271 0.23 -0.7
2,853,947 + DvMF_2271 0.33 -0.4
2,854,032 - DvMF_2271 0.48 -1.4
2,854,050 + DvMF_2271 0.50 -1.4
2,854,164 + DvMF_2271 0.69 -0.4
2,854,172 - DvMF_2271 0.71 -0.7
2,854,177 + DvMF_2271 0.71 -0.5
2,854,262 + DvMF_2271 0.85 -0.3
2,854,336 + -0.6
2,854,422 - -0.2
2,854,451 + -0.4
2,854,649 - -0.6
2,854,681 - -0.3
2,854,747 + -0.4
2,854,762 - DvMF_2272 0.12 -0.5
2,854,873 - DvMF_2272 0.26 -1.1
2,855,006 + DvMF_2272 0.44 +0.3

Or see this region's nucleotide sequence