Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2269 and DvMF_2270 are separated by 18 nucleotides DvMF_2270 and DvMF_2271 are separated by 128 nucleotides DvMF_2271 and DvMF_2272 are separated by 325 nucleotides
DvMF_2269: DvMF_2269 - DNA polymerase III, subunits gamma and tau (RefSeq), at 2,851,219 to 2,853,285
_2269
DvMF_2270: DvMF_2270 - hypothetical protein (RefSeq), at 2,853,304 to 2,853,615
_2270
DvMF_2271: DvMF_2271 - recombination protein RecR (RefSeq), at 2,853,744 to 2,854,349
_2271
DvMF_2272: DvMF_2272 - hypothetical protein (RefSeq), at 2,854,675 to 2,855,430
_2272
Position (kb)
2853
2854
2855 Strain fitness (log2 ratio)
-1
0
1 at 2853.726 kb on + strand at 2853.885 kb on + strand, within DvMF_2271 at 2853.947 kb on + strand, within DvMF_2271 at 2854.032 kb on - strand, within DvMF_2271 at 2854.050 kb on + strand, within DvMF_2271 at 2854.164 kb on + strand, within DvMF_2271 at 2854.172 kb on - strand, within DvMF_2271 at 2854.177 kb on + strand, within DvMF_2271 at 2854.262 kb on + strand, within DvMF_2271 at 2854.336 kb on + strand at 2854.422 kb on - strand at 2854.451 kb on + strand at 2854.649 kb on - strand at 2854.681 kb on - strand at 2854.747 kb on + strand at 2854.762 kb on - strand, within DvMF_2272 at 2854.873 kb on - strand, within DvMF_2272 at 2855.006 kb on + strand, within DvMF_2272
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 2,853,726 + +0.1 2,853,885 + DvMF_2271 0.23 -0.7 2,853,947 + DvMF_2271 0.33 -0.4 2,854,032 - DvMF_2271 0.48 -1.4 2,854,050 + DvMF_2271 0.50 -1.4 2,854,164 + DvMF_2271 0.69 -0.4 2,854,172 - DvMF_2271 0.71 -0.7 2,854,177 + DvMF_2271 0.71 -0.5 2,854,262 + DvMF_2271 0.85 -0.3 2,854,336 + -0.6 2,854,422 - -0.2 2,854,451 + -0.4 2,854,649 - -0.6 2,854,681 - -0.3 2,854,747 + -0.4 2,854,762 - DvMF_2272 0.12 -0.5 2,854,873 - DvMF_2272 0.26 -1.1 2,855,006 + DvMF_2272 0.44 +0.3
Or see this region's nucleotide sequence