Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2185 and DvMF_2186 are separated by 245 nucleotides DvMF_2186 and DvMF_2187 overlap by 4 nucleotides
DvMF_2185: DvMF_2185 - ThiJ/PfpI domain protein (RefSeq), at 2,727,957 to 2,728,697
_2185
DvMF_2186: DvMF_2186 - dual specificity protein phosphatase (RefSeq), at 2,728,943 to 2,730,445
_2186
DvMF_2187: DvMF_2187 - pyruvate phosphate dikinase PEP/pyruvate-binding (RefSeq), at 2,730,442 to 2,733,027
_2187
Position (kb)
2728
2729
2730
2731 Strain fitness (log2 ratio)
-1
0
1 at 2728.013 kb on - strand at 2728.118 kb on + strand, within DvMF_2185 at 2728.148 kb on - strand, within DvMF_2185 at 2728.153 kb on - strand, within DvMF_2185 at 2728.705 kb on - strand at 2728.876 kb on + strand at 2728.889 kb on + strand at 2728.920 kb on - strand at 2729.109 kb on - strand, within DvMF_2186 at 2729.163 kb on - strand, within DvMF_2186 at 2729.169 kb on + strand, within DvMF_2186 at 2729.266 kb on - strand, within DvMF_2186 at 2729.350 kb on + strand, within DvMF_2186 at 2729.570 kb on - strand, within DvMF_2186 at 2729.606 kb on - strand, within DvMF_2186 at 2729.711 kb on - strand, within DvMF_2186 at 2729.856 kb on - strand, within DvMF_2186 at 2729.953 kb on + strand, within DvMF_2186 at 2729.957 kb on - strand, within DvMF_2186 at 2730.065 kb on + strand, within DvMF_2186 at 2730.073 kb on - strand, within DvMF_2186 at 2730.192 kb on - strand, within DvMF_2186 at 2730.219 kb on + strand, within DvMF_2186 at 2730.307 kb on + strand at 2730.340 kb on + strand at 2730.690 kb on + strand at 2730.751 kb on + strand, within DvMF_2187 at 2730.759 kb on - strand, within DvMF_2187 at 2731.022 kb on + strand, within DvMF_2187 at 2731.079 kb on - strand, within DvMF_2187 at 2731.251 kb on - strand, within DvMF_2187 at 2731.383 kb on + strand, within DvMF_2187 at 2731.383 kb on + strand, within DvMF_2187
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 2,728,013 - -0.3 2,728,118 + DvMF_2185 0.22 +0.1 2,728,148 - DvMF_2185 0.26 -0.3 2,728,153 - DvMF_2185 0.26 +0.1 2,728,705 - -0.7 2,728,876 + -0.8 2,728,889 + -0.3 2,728,920 - -0.6 2,729,109 - DvMF_2186 0.11 -0.9 2,729,163 - DvMF_2186 0.15 -0.6 2,729,169 + DvMF_2186 0.15 +0.5 2,729,266 - DvMF_2186 0.21 -0.5 2,729,350 + DvMF_2186 0.27 +0.6 2,729,570 - DvMF_2186 0.42 -0.5 2,729,606 - DvMF_2186 0.44 -0.3 2,729,711 - DvMF_2186 0.51 +0.8 2,729,856 - DvMF_2186 0.61 -0.6 2,729,953 + DvMF_2186 0.67 -0.0 2,729,957 - DvMF_2186 0.67 -0.2 2,730,065 + DvMF_2186 0.75 -0.3 2,730,073 - DvMF_2186 0.75 -1.3 2,730,192 - DvMF_2186 0.83 +0.7 2,730,219 + DvMF_2186 0.85 +0.3 2,730,307 + -1.6 2,730,340 + -0.1 2,730,690 + +0.1 2,730,751 + DvMF_2187 0.12 -0.3 2,730,759 - DvMF_2187 0.12 -0.2 2,731,022 + DvMF_2187 0.22 -1.7 2,731,079 - DvMF_2187 0.25 -0.1 2,731,251 - DvMF_2187 0.31 -0.6 2,731,383 + DvMF_2187 0.36 -0.7 2,731,383 + DvMF_2187 0.36 +0.1
Or see this region's nucleotide sequence