Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1498

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1497 and DvMF_1498 overlap by 4 nucleotidesDvMF_1498 and DvMF_1499 overlap by 8 nucleotides DvMF_1497: DvMF_1497 - transport system permease protein (RefSeq), at 1,847,657 to 1,848,820 _1497 DvMF_1498: DvMF_1498 - ABC transporter related (RefSeq), at 1,848,817 to 1,849,830 _1498 DvMF_1499: DvMF_1499 - periplasmic binding protein (RefSeq), at 1,849,823 to 1,850,971 _1499 Position (kb) 1848 1849 1850Strain fitness (log2 ratio) -3 -2 -1 0 1at 1847.926 kb on - strand, within DvMF_1497at 1848.068 kb on + strand, within DvMF_1497at 1848.252 kb on + strand, within DvMF_1497at 1848.348 kb on + strand, within DvMF_1497at 1848.493 kb on - strand, within DvMF_1497at 1848.875 kb on + strandat 1849.294 kb on - strand, within DvMF_1498at 1849.346 kb on + strand, within DvMF_1498at 1849.346 kb on + strand, within DvMF_1498at 1849.420 kb on + strand, within DvMF_1498at 1849.425 kb on + strand, within DvMF_1498at 1849.438 kb on - strand, within DvMF_1498at 1849.507 kb on - strand, within DvMF_1498at 1849.509 kb on + strand, within DvMF_1498at 1849.542 kb on + strand, within DvMF_1498at 1849.564 kb on + strand, within DvMF_1498at 1849.740 kb on + strandat 1849.936 kb on + strandat 1850.113 kb on + strand, within DvMF_1499at 1850.177 kb on - strand, within DvMF_1499at 1850.336 kb on + strand, within DvMF_1499at 1850.600 kb on - strand, within DvMF_1499

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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1,847,926 - DvMF_1497 0.23 -2.8
1,848,068 + DvMF_1497 0.35 -0.8
1,848,252 + DvMF_1497 0.51 -0.6
1,848,348 + DvMF_1497 0.59 -2.2
1,848,493 - DvMF_1497 0.72 -2.6
1,848,875 + -2.8
1,849,294 - DvMF_1498 0.47 -1.6
1,849,346 + DvMF_1498 0.52 -1.2
1,849,346 + DvMF_1498 0.52 -0.3
1,849,420 + DvMF_1498 0.59 -1.7
1,849,425 + DvMF_1498 0.60 -1.0
1,849,438 - DvMF_1498 0.61 -3.3
1,849,507 - DvMF_1498 0.68 -1.6
1,849,509 + DvMF_1498 0.68 +1.2
1,849,542 + DvMF_1498 0.71 -1.4
1,849,564 + DvMF_1498 0.74 -1.1
1,849,740 + -0.8
1,849,936 + -2.1
1,850,113 + DvMF_1499 0.25 -0.7
1,850,177 - DvMF_1499 0.31 -2.3
1,850,336 + DvMF_1499 0.45 -2.6
1,850,600 - DvMF_1499 0.68 -2.2

Or see this region's nucleotide sequence