Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1334 and DvMF_1335 are separated by 143 nucleotides DvMF_1335 and DvMF_1336 are separated by 179 nucleotides DvMF_1336 and DvMF_1337 are separated by 64 nucleotides DvMF_1337 and DvMF_1338 are separated by 31 nucleotides
DvMF_1334: DvMF_1334 - response regulator receiver protein (RefSeq), at 1,629,160 to 1,630,653
_1334
DvMF_1335: DvMF_1335 - hypothetical protein (RefSeq), at 1,630,797 to 1,631,336
_1335
DvMF_1336: DvMF_1336 - hypothetical protein (RefSeq), at 1,631,516 to 1,631,998
_1336
DvMF_1337: DvMF_1337 - 4-hydroxybenzoate polyprenyltransferase (RefSeq), at 1,632,063 to 1,632,923
_1337
DvMF_1338: DvMF_1338 - metal dependent phosphohydrolase (RefSeq), at 1,632,955 to 1,634,310
_1338
Position (kb) 1631
1632 Strain fitness (log2 ratio) -1
0
1 at 1630.519 kb on + strand at 1630.588 kb on + strand at 1630.623 kb on + strand at 1630.624 kb on - strand at 1630.631 kb on - strand at 1630.709 kb on + strand at 1631.062 kb on - strand, within DvMF_1335 at 1631.625 kb on - strand, within DvMF_1336 at 1631.632 kb on + strand, within DvMF_1336 at 1631.959 kb on - strand at 1632.954 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 1,630,519 + +0.4 1,630,588 + +0.2 1,630,623 + -0.3 1,630,624 - +0.3 1,630,631 - -0.1 1,630,709 + -0.6 1,631,062 - DvMF_1335 0.49 -0.0 1,631,625 - DvMF_1336 0.23 -0.1 1,631,632 + DvMF_1336 0.24 -0.4 1,631,959 - -0.4 1,632,954 + -0.9
Or see this region's nucleotide sequence