Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1182

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1181 and DvMF_1182 are separated by 31 nucleotidesDvMF_1182 and DvMF_1183 are separated by 15 nucleotidesDvMF_1183 and DvMF_R0036 are separated by 22 nucleotidesDvMF_R0036 and DvMF_1184 are separated by 281 nucleotides DvMF_1181: DvMF_1181 - UDP-N-acetylglucosamine pyrophosphorylase (RefSeq), at 1,459,485 to 1,460,852 _1181 DvMF_1182: DvMF_1182 - hypothetical protein (RefSeq), at 1,460,884 to 1,461,120 _1182 DvMF_1183: DvMF_1183 - hypothetical protein (RefSeq), at 1,461,136 to 1,461,399 _1183 DvMF_R0036: DvMF_R0036 - 6S RNA (RefSeq), at 1,461,422 to 1,461,607 _R0036 DvMF_1184: DvMF_1184 - phosphodiesterase (RefSeq), at 1,461,889 to 1,463,448 _1184 Position (kb) 1460 1461 1462Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1460.934 kb on + strand, within DvMF_1182at 1461.283 kb on + strand, within DvMF_1183at 1461.659 kb on + strandat 1461.659 kb on + strandat 1461.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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1,460,934 + DvMF_1182 0.21 -2.0
1,461,283 + DvMF_1183 0.56 -4.5
1,461,659 + -2.4
1,461,659 + -0.8
1,461,814 + -1.0

Or see this region's nucleotide sequence