Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0586 and DvMF_0587 are separated by 543 nucleotides DvMF_0587 and DvMF_0588 overlap by 4 nucleotides DvMF_0588 and DvMF_0589 overlap by 4 nucleotides
DvMF_0586: DvMF_0586 - transcriptional regulator, XRE family (RefSeq), at 694,753 to 695,766
_0586
DvMF_0587: DvMF_0587 - hypothetical protein (RefSeq), at 696,310 to 697,458
_0587
DvMF_0588: DvMF_0588 - hypothetical protein (RefSeq), at 697,455 to 698,219
_0588
DvMF_0589: DvMF_0589 - glycosyl transferase, group 2 family protein (RefSeq), at 698,216 to 699,343
_0589
Position (kb) 696
697
698 Strain fitness (log2 ratio) -1
0
1 at 695.334 kb on + strand, within DvMF_0586 at 695.352 kb on + strand, within DvMF_0586 at 695.627 kb on + strand, within DvMF_0586 at 696.629 kb on + strand, within DvMF_0587 at 696.824 kb on + strand, within DvMF_0587 at 696.837 kb on - strand, within DvMF_0587 at 696.855 kb on + strand, within DvMF_0587 at 696.868 kb on + strand, within DvMF_0587 at 696.878 kb on + strand, within DvMF_0587 at 697.069 kb on + strand, within DvMF_0587 at 697.129 kb on + strand, within DvMF_0587 at 697.154 kb on + strand, within DvMF_0587 at 697.201 kb on + strand, within DvMF_0587 at 697.204 kb on - strand, within DvMF_0587 at 697.443 kb on - strand at 697.493 kb on + strand at 697.501 kb on - strand at 697.810 kb on - strand, within DvMF_0588 at 697.845 kb on + strand, within DvMF_0588 at 697.979 kb on + strand, within DvMF_0588 at 698.076 kb on - strand, within DvMF_0588 at 698.177 kb on + strand at 698.285 kb on - strand at 698.310 kb on + strand at 698.382 kb on - strand, within DvMF_0589
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 695,334 + DvMF_0586 0.57 -0.5 695,352 + DvMF_0586 0.59 -0.1 695,627 + DvMF_0586 0.86 -0.2 696,629 + DvMF_0587 0.28 -0.0 696,824 + DvMF_0587 0.45 -0.4 696,837 - DvMF_0587 0.46 -1.3 696,855 + DvMF_0587 0.47 -1.4 696,868 + DvMF_0587 0.49 -1.2 696,878 + DvMF_0587 0.49 -1.4 697,069 + DvMF_0587 0.66 -1.0 697,129 + DvMF_0587 0.71 -0.3 697,154 + DvMF_0587 0.73 -0.3 697,201 + DvMF_0587 0.78 -1.1 697,204 - DvMF_0587 0.78 +0.2 697,443 - -0.5 697,493 + -1.3 697,501 - -0.0 697,810 - DvMF_0588 0.46 -1.3 697,845 + DvMF_0588 0.51 -1.2 697,979 + DvMF_0588 0.68 +0.8 698,076 - DvMF_0588 0.81 -0.7 698,177 + -0.7 698,285 - -0.5 698,310 + -0.4 698,382 - DvMF_0589 0.15 -0.8
Or see this region's nucleotide sequence