Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0433

Experiment: MoYLS4 media with NH4 no edta

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0432 and pyrG are separated by 617 nucleotidespyrG and DvMF_0434 are separated by 517 nucleotides DvMF_0432: DvMF_0432 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 505,659 to 506,471 _0432 DvMF_0433: pyrG - CTP synthetase (RefSeq), at 507,089 to 508,741 pyrG DvMF_0434: DvMF_0434 - Phosphoribosylformylglycinamidine synthase (RefSeq), at 509,259 to 510,068 _0434 Position (kb) 507 508 509Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 506.526 kb on - strandat 506.710 kb on - strandat 506.749 kb on + strandat 506.757 kb on - strandat 506.816 kb on - strandat 507.003 kb on - strandat 507.049 kb on + strandat 508.932 kb on + strandat 508.938 kb on - strandat 508.979 kb on + strandat 508.979 kb on + strandat 508.979 kb on + strandat 509.098 kb on - strandat 509.187 kb on - strandat 509.395 kb on + strand, within DvMF_0434at 509.596 kb on - strand, within DvMF_0434at 509.689 kb on + strand, within DvMF_0434

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta
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506,526 - -2.2
506,710 - -0.1
506,749 + +0.2
506,757 - +0.6
506,816 - +0.3
507,003 - -0.7
507,049 + -0.2
508,932 + -0.3
508,938 - -0.2
508,979 + -0.4
508,979 + -0.1
508,979 + -0.4
509,098 - -0.8
509,187 - -0.7
509,395 + DvMF_0434 0.17 -1.7
509,596 - DvMF_0434 0.42 -5.3
509,689 + DvMF_0434 0.53 -4.5

Or see this region's nucleotide sequence