Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0420 and DvMF_0421 are separated by 153 nucleotides DvMF_0421 and DvMF_0422 are separated by 129 nucleotides DvMF_0422 and DvMF_0423 are separated by 4 nucleotides DvMF_0423 and DvMF_0424 are separated by 247 nucleotides
DvMF_0420: DvMF_0420 - putative manganese-dependent inorganic pyrophosphatase (RefSeq), at 495,720 to 496,640
_0420
DvMF_0421: DvMF_0421 - hypothetical protein (RefSeq), at 496,794 to 497,363
_0421
DvMF_0422: DvMF_0422 - PTS system sorbose subfamily IIB component (RefSeq), at 497,493 to 497,957
_0422
DvMF_0423: DvMF_0423 - PTS system fructose subfamily IIA component (RefSeq), at 497,962 to 498,480
_0423
DvMF_0424: DvMF_0424 - hypothetical protein (RefSeq), at 498,728 to 499,609
_0424
Position (kb) 497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 496.913 kb on - strand, within DvMF_0421 at 497.089 kb on - strand, within DvMF_0421 at 497.305 kb on + strand, within DvMF_0421 at 497.308 kb on - strand at 497.773 kb on - strand, within DvMF_0422 at 498.096 kb on + strand, within DvMF_0423 at 498.096 kb on + strand, within DvMF_0423 at 498.270 kb on + strand, within DvMF_0423 at 498.286 kb on + strand, within DvMF_0423 at 498.418 kb on - strand, within DvMF_0423 at 498.438 kb on - strand at 498.438 kb on - strand at 498.455 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 496,913 - DvMF_0421 0.21 -2.9 497,089 - DvMF_0421 0.52 -1.4 497,305 + DvMF_0421 0.90 -1.7 497,308 - -1.6 497,773 - DvMF_0422 0.60 -1.9 498,096 + DvMF_0423 0.26 +1.5 498,096 + DvMF_0423 0.26 +1.6 498,270 + DvMF_0423 0.59 +0.7 498,286 + DvMF_0423 0.62 +1.5 498,418 - DvMF_0423 0.88 +1.2 498,438 - +1.8 498,438 - +1.8 498,455 + +2.8
Or see this region's nucleotide sequence