Experiment: MoYLS4 media with NH4 no edta
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0202 and DvMF_0203 are separated by 237 nucleotides DvMF_0203 and DvMF_0204 are separated by 156 nucleotides
DvMF_0202: DvMF_0202 - phosphoribosylaminoimidazole synthetase (RefSeq), at 219,857 to 220,909
_0202
DvMF_0203: DvMF_0203 - Radical SAM domain protein (RefSeq), at 221,147 to 222,682
_0203
DvMF_0204: DvMF_0204 - hypothetical protein (RefSeq), at 222,839 to 223,672
_0204
Position (kb) 221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 220.270 kb on + strand, within DvMF_0202 at 220.816 kb on - strand at 220.979 kb on + strand at 220.992 kb on - strand at 220.992 kb on - strand at 220.992 kb on - strand at 221.002 kb on - strand at 221.110 kb on + strand at 221.118 kb on - strand at 221.230 kb on - strand at 221.322 kb on - strand, within DvMF_0203 at 221.796 kb on - strand, within DvMF_0203 at 222.029 kb on + strand, within DvMF_0203 at 222.148 kb on + strand, within DvMF_0203 at 222.264 kb on - strand, within DvMF_0203 at 222.279 kb on + strand, within DvMF_0203 at 222.287 kb on - strand, within DvMF_0203 at 222.332 kb on - strand, within DvMF_0203 at 222.384 kb on - strand, within DvMF_0203 at 222.504 kb on - strand, within DvMF_0203 at 222.860 kb on + strand at 222.877 kb on + strand at 222.932 kb on - strand, within DvMF_0204 at 222.970 kb on + strand, within DvMF_0204 at 222.970 kb on + strand, within DvMF_0204 at 222.995 kb on - strand, within DvMF_0204 at 223.298 kb on - strand, within DvMF_0204 at 223.346 kb on + strand, within DvMF_0204 at 223.371 kb on + strand, within DvMF_0204 at 223.448 kb on + strand, within DvMF_0204 at 223.556 kb on + strand, within DvMF_0204
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 media with NH4 no edta remove 220,270 + DvMF_0202 0.39 -2.9 220,816 - -2.9 220,979 + -0.2 220,992 - +0.5 220,992 - -1.3 220,992 - -0.1 221,002 - -0.9 221,110 + +0.3 221,118 - +0.1 221,230 - -0.7 221,322 - DvMF_0203 0.11 -0.6 221,796 - DvMF_0203 0.42 -0.6 222,029 + DvMF_0203 0.57 +0.0 222,148 + DvMF_0203 0.65 +0.8 222,264 - DvMF_0203 0.73 +1.5 222,279 + DvMF_0203 0.74 +0.9 222,287 - DvMF_0203 0.74 +0.6 222,332 - DvMF_0203 0.77 +0.2 222,384 - DvMF_0203 0.81 +1.8 222,504 - DvMF_0203 0.88 +0.4 222,860 + -0.9 222,877 + -0.3 222,932 - DvMF_0204 0.11 -0.5 222,970 + DvMF_0204 0.16 -0.2 222,970 + DvMF_0204 0.16 -0.5 222,995 - DvMF_0204 0.19 -0.3 223,298 - DvMF_0204 0.55 +0.1 223,346 + DvMF_0204 0.61 -0.5 223,371 + DvMF_0204 0.64 -0.3 223,448 + DvMF_0204 0.73 -0.3 223,556 + DvMF_0204 0.86 -0.6
Or see this region's nucleotide sequence