Experiment: Pyruvate-Sulfate (60-15mM) with Tungstate 2mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tme and pepA are separated by 57 nucleotides pepA and DVU0416 are separated by 254 nucleotides
DVU0414: tme - NADP-dependent malic enzyme-related protein (TIGR), at 463,867 to 465,186
tme
DVU0415: pepA - cytosol aminopeptidase (TIGR), at 465,244 to 466,767
pepA
DVU0416: DVU0416 - GGDEF domain protein (TIGR), at 467,022 to 468,140
DVU0416
Position (kb) 465
466
467 Strain fitness (log2 ratio) -1
0
1
2 at 464.373 kb on - strand, within tme at 464.386 kb on - strand, within tme at 464.420 kb on - strand, within tme at 464.435 kb on - strand, within tme at 464.519 kb on - strand, within tme at 464.520 kb on - strand, within tme at 464.580 kb on - strand, within tme at 464.715 kb on - strand, within tme at 464.751 kb on + strand, within tme at 464.751 kb on + strand, within tme at 464.751 kb on + strand, within tme at 464.759 kb on - strand, within tme at 464.759 kb on - strand, within tme at 464.766 kb on - strand, within tme at 464.873 kb on - strand, within tme at 464.879 kb on + strand, within tme at 464.930 kb on - strand, within tme at 464.996 kb on - strand, within tme at 464.996 kb on - strand, within tme at 465.008 kb on + strand, within tme at 465.115 kb on - strand at 465.126 kb on + strand at 465.134 kb on - strand at 465.245 kb on - strand at 465.245 kb on - strand at 465.331 kb on - strand at 465.495 kb on + strand, within pepA at 465.604 kb on + strand, within pepA at 465.606 kb on + strand, within pepA at 465.644 kb on - strand, within pepA at 465.660 kb on + strand, within pepA at 465.663 kb on - strand, within pepA at 465.675 kb on + strand, within pepA at 465.683 kb on + strand, within pepA at 465.685 kb on + strand, within pepA at 465.746 kb on - strand, within pepA at 465.747 kb on - strand, within pepA at 465.765 kb on - strand, within pepA at 465.798 kb on + strand, within pepA at 465.940 kb on + strand, within pepA at 465.969 kb on - strand, within pepA at 466.085 kb on + strand, within pepA at 466.129 kb on + strand, within pepA at 466.209 kb on - strand, within pepA at 466.214 kb on - strand, within pepA at 466.214 kb on - strand, within pepA at 466.221 kb on + strand, within pepA at 466.296 kb on - strand, within pepA at 466.313 kb on + strand, within pepA at 466.313 kb on + strand, within pepA at 466.315 kb on + strand, within pepA at 466.321 kb on - strand, within pepA at 466.321 kb on - strand, within pepA at 466.337 kb on + strand, within pepA at 466.343 kb on - strand, within pepA at 466.345 kb on - strand, within pepA at 466.442 kb on - strand, within pepA at 466.458 kb on - strand, within pepA at 466.497 kb on + strand, within pepA at 466.573 kb on - strand, within pepA at 466.633 kb on - strand at 466.645 kb on + strand at 466.653 kb on - strand at 466.692 kb on + strand at 466.806 kb on - strand at 466.992 kb on - strand at 467.175 kb on - strand, within DVU0416 at 467.179 kb on + strand, within DVU0416 at 467.279 kb on + strand, within DVU0416 at 467.389 kb on - strand, within DVU0416 at 467.389 kb on - strand, within DVU0416 at 467.532 kb on + strand, within DVU0416 at 467.534 kb on - strand, within DVU0416 at 467.541 kb on - strand, within DVU0416 at 467.570 kb on + strand, within DVU0416 at 467.588 kb on - strand, within DVU0416 at 467.705 kb on + strand, within DVU0416 at 467.705 kb on + strand, within DVU0416 at 467.713 kb on - strand, within DVU0416 at 467.728 kb on - strand, within DVU0416 at 467.749 kb on + strand, within DVU0416
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfate (60-15mM) with Tungstate 2mM remove 464,373 - tme DVU0414 0.38 +2.3 464,386 - tme DVU0414 0.39 +1.1 464,420 - tme DVU0414 0.42 +1.3 464,435 - tme DVU0414 0.43 -1.5 464,519 - tme DVU0414 0.49 -0.3 464,520 - tme DVU0414 0.49 -0.1 464,580 - tme DVU0414 0.54 +0.8 464,715 - tme DVU0414 0.64 +1.2 464,751 + tme DVU0414 0.67 +0.3 464,751 + tme DVU0414 0.67 -0.4 464,751 + tme DVU0414 0.67 +0.2 464,759 - tme DVU0414 0.68 -0.4 464,759 - tme DVU0414 0.68 -0.4 464,766 - tme DVU0414 0.68 +0.2 464,873 - tme DVU0414 0.76 +0.3 464,879 + tme DVU0414 0.77 -1.2 464,930 - tme DVU0414 0.81 -1.7 464,996 - tme DVU0414 0.86 -0.8 464,996 - tme DVU0414 0.86 -0.6 465,008 + tme DVU0414 0.86 +0.9 465,115 - -1.0 465,126 + -0.9 465,134 - -0.5 465,245 - +2.2 465,245 - +1.0 465,331 - +1.8 465,495 + pepA DVU0415 0.16 +1.8 465,604 + pepA DVU0415 0.24 +2.5 465,606 + pepA DVU0415 0.24 +2.6 465,644 - pepA DVU0415 0.26 +1.3 465,660 + pepA DVU0415 0.27 +1.7 465,663 - pepA DVU0415 0.27 -0.2 465,675 + pepA DVU0415 0.28 +2.0 465,683 + pepA DVU0415 0.29 +1.3 465,685 + pepA DVU0415 0.29 +1.7 465,746 - pepA DVU0415 0.33 +1.8 465,747 - pepA DVU0415 0.33 +1.7 465,765 - pepA DVU0415 0.34 +2.0 465,798 + pepA DVU0415 0.36 +2.2 465,940 + pepA DVU0415 0.46 +1.8 465,969 - pepA DVU0415 0.48 +2.0 466,085 + pepA DVU0415 0.55 +1.4 466,129 + pepA DVU0415 0.58 +1.9 466,209 - pepA DVU0415 0.63 +1.6 466,214 - pepA DVU0415 0.64 +1.6 466,214 - pepA DVU0415 0.64 +1.5 466,221 + pepA DVU0415 0.64 +1.8 466,296 - pepA DVU0415 0.69 +1.5 466,313 + pepA DVU0415 0.70 +1.9 466,313 + pepA DVU0415 0.70 +1.4 466,315 + pepA DVU0415 0.70 +0.3 466,321 - pepA DVU0415 0.71 +0.7 466,321 - pepA DVU0415 0.71 +1.3 466,337 + pepA DVU0415 0.72 +1.3 466,343 - pepA DVU0415 0.72 +1.8 466,345 - pepA DVU0415 0.72 +1.8 466,442 - pepA DVU0415 0.79 +1.6 466,458 - pepA DVU0415 0.80 +2.4 466,497 + pepA DVU0415 0.82 +1.1 466,573 - pepA DVU0415 0.87 +1.4 466,633 - +1.6 466,645 + +0.8 466,653 - +1.8 466,692 + +1.1 466,806 - +0.1 466,992 - -0.7 467,175 - DVU0416 0.14 +0.1 467,179 + DVU0416 0.14 -1.4 467,279 + DVU0416 0.23 -1.2 467,389 - DVU0416 0.33 -0.0 467,389 - DVU0416 0.33 -0.3 467,532 + DVU0416 0.46 -0.4 467,534 - DVU0416 0.46 -0.1 467,541 - DVU0416 0.46 +0.6 467,570 + DVU0416 0.49 -0.3 467,588 - DVU0416 0.51 -0.5 467,705 + DVU0416 0.61 +1.6 467,705 + DVU0416 0.61 +1.6 467,713 - DVU0416 0.62 -0.3 467,728 - DVU0416 0.63 +0.2 467,749 + DVU0416 0.65 +0.4
Or see this region's nucleotide sequence